View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_2 (Length: 1007)
Name: NF1343_high_2
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Complemental strand, 33910079 - 33909510
Alignment:
| Q |
13 |
aatataggggcagattgaaaaattataaaagcacttgcaaatgtgctccaacggtcttcctctaagagcattaacactgttttgccttaactcacaaggt |
112 |
Q |
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| T |
33910079 |
aatataggggcagattgaaaaattataaaagcacttgcaaatgtgctccaacggtcttcctctaagagcattaac----------------tcacaaggt |
33909996 |
T |
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| Q |
113 |
ccgcaacatgtatttaatcaaaatcaaaagtttatcaatgccaccaaactaacaagtaacatatcgtaatattgctttaaagggttcaatcatgtgcaat |
212 |
Q |
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| T |
33909995 |
ccacaacatgtatttaatcaaaatcaaaagtttatcaatggcaccaaactaacaagtaacatatcgtaatattgctttaaagggtccaatcatgtgcaat |
33909896 |
T |
|
| Q |
213 |
ttttt-atgtcaatttgatgaaaagttgttcagcaaaacaattaattctgagttgccaat--catgtacaatcttttggacaatatatttgtagggttgg |
309 |
Q |
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| T |
33909895 |
ttttttatgtgaatttgatgaaaagttgttcggcaaaacaattaattctgagttgccaatatcatgtgcaatctttcggacaatatatttgtaaggttgg |
33909796 |
T |
|
| Q |
310 |
gaatatatgaattgttatgnnnnnnnnnnncttcaacttattataatgannnnnnngaaataactgattataatgatatgaacagttttttgagaggcat |
409 |
Q |
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| T |
33909795 |
gaatatacgaattgttatgtttttttttttcttcaactgattataatgatttttttgaaataactgattataatgatatgaacagttttttgagaggcat |
33909696 |
T |
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| Q |
410 |
gatattgatatgattatgaactatgttttattttttaacctctgaagtcacaaaaattttataacatgatatctggaattgaaaattcctaatgttgtct |
509 |
Q |
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| T |
33909695 |
gatat------gattatgaactatgttttattttttaacctctgaagtcacaaaaattttataacatgatatctggaattgaaaattcctaatggtgtct |
33909602 |
T |
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| Q |
510 |
tttgaatcaggccaaactgacaaacatcgaccaggatatatgacagacttcttttcccttccaatctattttcctcagcaaagtaccaatct |
601 |
Q |
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| T |
33909601 |
tttgaatcaggccaaactgacaaacatcgaccaggatataggacagacttcttttcccttccaatctattttcctcagcaaagtaccaatct |
33909510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 596 - 978
Target Start/End: Complemental strand, 33909492 - 33909110
Alignment:
| Q |
596 |
caatctgaaatcttaaattccagatatcagattacaaaatcttaatatttgattgtcctcgaggctttttgtttatttctttggtagaaaagcgtagttc |
695 |
Q |
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| T |
33909492 |
caatttgaaatcttaaattccagatatcagattacaaaatcttaatctttgattgtcctcgaggctttttgtttatttctttggtaggaaagcgtagttt |
33909393 |
T |
|
| Q |
696 |
ggtaatcccgtagcctttgaaacattttagagcgacaatcaataatgatgttcttagcgaaatttcagttttgtctaagaggattgcgagttttgtgtaa |
795 |
Q |
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| T |
33909392 |
ggtaatcccgtagcctttgaaatattttagagcgacaatcaataataatgttcttagcgaaatttcagttttgtctaagaggattgcgagttttgtgtaa |
33909293 |
T |
|
| Q |
796 |
gaggattgcgggtcaacataaattcaaattttttaagaggattacaagagacgtttgtgtaaagtgacgagtctcaacgcattcatactattagtgcaca |
895 |
Q |
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| T |
33909292 |
gaggattgcgggtcaacataaattcaaattttttaacaggattacaagagacgtttgagtaaagtgacgagtctcaacgcattcatactattagtgcaca |
33909193 |
T |
|
| Q |
896 |
tcatggagaaagtgacattttaagtacatcttatatcatgacttcaattaggtggattatcaaccgattaataacgaaatttg |
978 |
Q |
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| T |
33909192 |
tcatggagaaagtgacattttaagtacatcttatatcatgacttcaattaggtggattatcaaccgattaataacgaaatttg |
33909110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 33924774 - 33924726
Alignment:
| Q |
445 |
taacctctgaagtcacaaaaattttataacatgatatctggaattgaaa |
493 |
Q |
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| T |
33924774 |
taacctctgaagtcaccaaaattttataatatgatatctggagttgaaa |
33924726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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