View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_20 (Length: 644)
Name: NF1343_high_20
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 4 - 548
Target Start/End: Complemental strand, 52876982 - 52876439
Alignment:
| Q |
4 |
atgtcgaataatatcaaatagattcaataaatatctctatcatgagtgagttgtaaaaatcatta--gagacaacaacaaaccatttttcaatgcgttgt |
101 |
Q |
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| T |
52876982 |
atgtcaaataaaatcaaatagattcaataaatatctctatcatgagtgagttgtaaaaatcattattgagacaacaa-aaaccatttttcaatgcgttgt |
52876884 |
T |
|
| Q |
102 |
tgtagaaagtttgttatggaatcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgttt |
201 |
Q |
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| T |
52876883 |
tgtagaaagtttgttatggaatcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgttt |
52876784 |
T |
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| Q |
202 |
gtgcatacgtcaacatgttcatttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatggaagtatgaagtcatcaacaaagttaaa |
301 |
Q |
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| T |
52876783 |
gtgcatacgtcaacatgttcatttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatgaaagtatgaagtcatcaacaaagttaaa |
52876684 |
T |
|
| Q |
302 |
cctacgactaaaaatcagtgcaacttttgcctttgtttttgaaaagnnnnnnnnnntcatggatttgtcttgtttcatcaattagagtcggttaatgaca |
401 |
Q |
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| T |
52876683 |
cctacgactaaaaatcagtgcaacttttgcctttgtttttgaaaag--aaaaaaaatcatggatttgttttgtttcatcaattagagtcggttaatgaca |
52876586 |
T |
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| Q |
402 |
tgtttaaagaaaacaaattaaatctcatacaattatcaatatgagtaatatattccaaagtttgtctctttgtcttaaagttttagtgcataaattgcaa |
501 |
Q |
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| T |
52876585 |
tgtttaaagaaaacaaattaaatctcatacaattatcaatatgagtaatatattccaaagtttgtctctttgtcttaaagttttagtgcataaattgcaa |
52876486 |
T |
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| Q |
502 |
tgataatagaaattgtgttggtactagaaacttctacttacaagaac |
548 |
Q |
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| T |
52876485 |
tgataatagaaattgtattggtactagaaacttccacttacaagaac |
52876439 |
T |
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