View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_high_22 (Length: 625)

Name: NF1343_high_22
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_high_22
NF1343_high_22
[»] chr6 (14 HSPs)
chr6 (108-615)||(3585397-3585907)
chr6 (369-615)||(3575572-3575821)
chr6 (418-615)||(3572340-3572537)
chr6 (416-613)||(3569291-3569488)
chr6 (418-613)||(3563645-3563840)
chr6 (108-314)||(3575339-3575537)
chr6 (58-109)||(20774152-20774203)
chr6 (424-612)||(13275583-13275767)
chr6 (56-109)||(7612609-7612662)
chr6 (56-109)||(31879518-31879571)
chr6 (57-109)||(31386861-31386913)
chr6 (56-106)||(3586484-3586534)
chr6 (56-105)||(3299833-3299882)
chr6 (64-102)||(1066416-1066454)
[»] chr2 (8 HSPs)
chr2 (56-109)||(9694012-9694065)
chr2 (56-109)||(28599488-28599541)
chr2 (56-109)||(5608864-5608917)
chr2 (58-105)||(4375612-4375659)
chr2 (56-109)||(37984788-37984841)
chr2 (60-109)||(43682127-43682176)
chr2 (56-109)||(18477146-18477199)
chr2 (56-97)||(43681917-43681958)
[»] chr1 (7 HSPs)
chr1 (56-106)||(35312249-35312299)
chr1 (56-106)||(10019646-10019696)
chr1 (56-109)||(24701539-24701592)
chr1 (56-109)||(30830401-30830454)
chr1 (56-109)||(46545001-46545054)
chr1 (56-109)||(48380742-48380795)
chr1 (58-106)||(52455028-52455076)
[»] chr8 (9 HSPs)
chr8 (60-115)||(38619907-38619962)
chr8 (56-101)||(9632389-9632434)
chr8 (56-109)||(23514082-23514135)
chr8 (60-105)||(13566475-13566520)
chr8 (56-106)||(15716149-15716199)
chr8 (56-109)||(33497077-33497130)
chr8 (56-106)||(24529739-24529789)
chr8 (75-109)||(37713776-37713810)
chr8 (56-109)||(40422430-40422483)
[»] chr4 (9 HSPs)
chr4 (58-109)||(8286995-8287046)
chr4 (56-109)||(35730931-35730984)
chr4 (58-106)||(32846425-32846473)
chr4 (56-101)||(489462-489507)
chr4 (56-101)||(515254-515299)
chr4 (60-105)||(27813114-27813159)
chr4 (56-105)||(50246132-50246181)
chr4 (56-105)||(37678122-37678171)
chr4 (56-109)||(48507475-48507528)
[»] chr3 (7 HSPs)
chr3 (56-109)||(28310618-28310671)
chr3 (56-106)||(46670528-46670578)
chr3 (56-109)||(21255801-21255854)
chr3 (58-109)||(38642930-38642981)
chr3 (56-109)||(30890268-30890321)
chr3 (56-109)||(30803907-30803960)
chr3 (56-109)||(33989075-33989128)
[»] chr5 (12 HSPs)
chr5 (56-103)||(21260926-21260973)
chr5 (56-109)||(22024140-22024193)
chr5 (56-109)||(22533660-22533713)
chr5 (56-109)||(41339623-41339676)
chr5 (56-106)||(17968619-17968669)
chr5 (56-106)||(18934774-18934824)
chr5 (56-106)||(34404545-34404594)
chr5 (56-109)||(16118221-16118274)
chr5 (56-103)||(8323117-8323164)
chr5 (56-109)||(7015779-7015832)
chr5 (56-109)||(8654168-8654221)
chr5 (56-109)||(27753749-27753802)
[»] chr7 (9 HSPs)
chr7 (56-109)||(5636087-5636139)
chr7 (58-106)||(27557911-27557959)
chr7 (56-106)||(19980011-19980061)
chr7 (59-109)||(47121342-47121392)
chr7 (72-109)||(5280541-5280578)
chr7 (56-97)||(27558134-27558175)
chr7 (56-109)||(44545865-44545918)
chr7 (64-109)||(15827991-15828036)
chr7 (56-97)||(40022527-40022568)
[»] scaffold0279 (2 HSPs)
scaffold0279 (58-106)||(11130-11178)
scaffold0279 (56-97)||(10914-10955)
[»] scaffold0233 (1 HSPs)
scaffold0233 (56-109)||(8494-8547)
[»] scaffold0202 (1 HSPs)
scaffold0202 (56-108)||(14296-14348)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 108 - 615
Target Start/End: Complemental strand, 3585907 - 3585397
Alignment:
Q  108 tattggatgaaacaaggttttcatgataatcaattgtcatattgtggatatctgatatatttctgaa---ttttttatttataattctaaaataatatat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||| ||||||    
T  3585907 tattggatgaaacaaggttttcatgataatcaattgtcatattgtggatatctgatatatttctgaaagattttttttttataattctaaaatgatatat 3585808  T
Q  205 gtgtggcttgagatgcaagtgcaatgctcgaaaccaattgaaaatcaagatatagattttgtaagataaggacctctagttttccttgttggaatcacat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3585807 gtgtggcttgagatgcaagtgcaatgctcgaaaccaattgaaaatcaagatatagattttgtaagataaggacctctagttttccttgttggaatcacat 3585708  T
Q  305 ataaatagtatctaccatgcatcatcaacaatcatcctcttaccttatcaaaaataaataatcctcctcttcattttcaatagtactactcgtttgttta 404  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3585707 ataaatagtatccaccatgcatcatcaacaatcatcctcttaccttatcaaaaataaataatcctcctcttcattttcaatagaactactcgtttgttta 3585608  T
Q  405 acttagttgccaaaaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccag 504  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  3585607 acttagttaccaaaaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggcaatcaagctttccccttcgactccag 3585508  T
Q  505 accttgtgatgggaagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttggg 604  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3585507 accttgtgatgggaagaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggtccagaccgtgtcaagtacttggg 3585408  T
Q  605 tccattctctg 615  Q
    |||||||||||    
T  3585407 tccattctctg 3585397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 369 - 615
Target Start/End: Original strand, 3575572 - 3575821
Alignment:
Q  369 tcctcttcattttcaatagtactactcgtttg--tttaacttagttgccaa-aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaa 465  Q
    |||||||||||||||||||  ||| |  ||||  ||||||| |||||| || ||||||||| ||||||| | ||||||||||||||||| |||||| |||    
T  3575572 tcctcttcattttcaatagagctatttatttgcatttaactaagttgcaaataaaatactagaatggctacatcaacaatggctctctcttcttcaacaa 3575671  T
Q  466 tggttggaaaggaaatcaagctttccccttccactccagaccttgtgatgggaagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctgg 565  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |    |||||||    
T  3575672 tggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaacaagaagaacgtcccttctgg 3575771  T
Q  566 aagctagtggtacggtccagaccgtgtcaagtacttgggtccattctctg 615  Q
    ||||  ||||||||||||||| |||||||| |||||||||||||||||||    
T  3575772 aagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctg 3575821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 418 - 615
Target Start/End: Original strand, 3572340 - 3572537
Alignment:
Q  418 aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatggg 517  Q
    ||||| |||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||| ||||||||||||||| || |||||||||||||| |||||    
T  3572340 aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg 3572439  T
Q  518 aagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattctctg 615  Q
    |||||| | ||||||||||||||||||||||||||    | |||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  3572440 aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg 3572537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 416 - 613
Target Start/End: Original strand, 3569291 - 3569488
Alignment:
Q  416 aaaaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatg 515  Q
    ||||||||| ||||||||||||||||||||| | ||||| ||||||||| | || || |||| |||||| |||||||| ||||||| |||| ||| | ||    
T  3569291 aaaaaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccactcaagacattggggtg 3569390  T
Q  516 ggaagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattctc 613  Q
    |||||| |||  |||||||||||||||||||||||| ||  | | |||||||||   |||||||||||||||||||| ||||||||||| ||||||||    
T  3569391 ggaagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctc 3569488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 613
Target Start/End: Original strand, 3563645 - 3563840
Alignment:
Q  418 aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatggg 517  Q
    ||||||||| |||||| |||||||||||| ||||||| ||||||||| | || || |||| ||||||||||||||| ||||| | |||| ||| | ||||    
T  3563645 aaaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccatccacccaagacattggggtggg 3563744  T
Q  518 aagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattctc 613  Q
    |||| |||  ||||||||| |||||||||||||| |   | ||||||||||    |||||||||||||||||||||||||||||||| ||||||||    
T  3563745 aagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctc 3563840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 108 - 314
Target Start/End: Original strand, 3575339 - 3575537
Alignment:
Q  108 tattggatgaaacaaggttttcatgataatcaattgtcatattgtggatatctgatatatttctgaattttttatttataattctaaaataatatatgtg 207  Q
    ||||||||| |||||| ||||||||||| |||||||||||||| ||||||| |||||| ||| |||| |        |||||||| ||   | |||| ||    
T  3575339 tattggatggaacaagtttttcatgatattcaattgtcatattctggatatttgatattttt-tgaaata-------ataattctgaagagaaatatatg 3575430  T
Q  208 tggcttgagatgcaagtgcaatgctcgaaaccaattgaaaatcaagatatagattttgtaagataaggacctctagttttccttgttggaatcacatata 307  Q
    ||| |||||||| ||||| ||||||| |||||||| ||||||||||||||||||||  ||||||| |||||||||||||| |||| || | | |||||||    
T  3575431 tggtttgagatgtaagtgtaatgctccaaaccaatagaaaatcaagatatagatttcataagatatggacctctagtttttcttgatgaattaacatata 3575530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 20774152 - 20774203
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  20774152 taatcctttcattttgtcattgcaaatattaatcatttgaaaaatggtccta 20774203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 612
Target Start/End: Original strand, 13275583 - 13275767
Alignment:
Q  424 ctacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatgggaagaat 523  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||| |||||| |||  ||| || || | ||||||||  || |||||  |    
T  13275583 ctacaatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagggt 13275682  T
Q  524 catcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattct 612  Q
    || |||||  ||||||||||| |||||      |||||| |||||    ||||| ||||||||||||||||||||| |||| |||||||    
T  13275683 caccatga-aaaaacaaccacaaagaa---agtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattct 13275767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 7612609 - 7612662
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  7612609 actaattctttcattttgtcattgcaaatattaatcatttgaaaaatggtccta 7612662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 31879518 - 31879571
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  31879518 actaatctttccattttgccattgcaaatattaataatttgaaaaatggtccta 31879571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 31386861 - 31386913
Alignment:
Q  57 ctaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||||  ||||||| |||||||||||||||||||| |||||    
T  31386861 ctaatccttccattttgcaattgcaaatattaatcatttgaaaaatgatccta 31386913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 3586534 - 3586484
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||| ||||||||||||| |||||||| |||||||||||| ||||||||||    
T  3586534 actattccttccattttgccattgcaaatattaatcatttaaaaaatggtc 3586484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 3299882 - 3299833
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggt 105  Q
    ||||||||||||| | || |||||||| ||||||||||||||||||||||    
T  3299882 actaatccttccaatctgccattgcaaatattaatcatttgaaaaatggt 3299833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 1066454 - 1066416
Alignment:
Q  64 ttccattttgtcattgcaattattaatcatttgaaaaat 102  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  1066454 ttccattttgccattgcaaatattaatcatttgaaaaat 1066416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 9694065 - 9694012
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9694065 actaatccttccattttgtcattgcaaatattaatcatttgaaaaatggtccta 9694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 28599488 - 28599541
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  28599488 actaatccttccattttgccattgcaaatattaatcatttgaaaaatggtccta 28599541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 5608917 - 5608864
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  5608917 actaatcctttcattttgccattgcaaatattaatcatttgaaaaatggtccta 5608864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 4375612 - 4375659
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggt 105  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  4375612 taatccttccattttgccatagcaaatattaatcatttgaaaaatggt 4375659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 37984788 - 37984841
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||    
T  37984788 actaattcttccattttgccattgtaaatattaattatttgaaaaatggtccta 37984841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 43682176 - 43682127
Alignment:
Q  60 atccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||||  |||| || ||||||||||||||||||||||||||    
T  43682176 atccttccattttgctattgtaaatattaatcatttgaaaaatggtccta 43682127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 18477199 - 18477146
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| |||||||||| ||||| |  |||||||||||| |||||||||||||    
T  18477199 actaatcattccattttgccattgaagatattaatcatttcaaaaatggtccta 18477146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 43681917 - 43681958
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttga 97  Q
    ||||||| |||||||||| |||||||| ||||||||||||||    
T  43681917 actaatcattccattttgccattgcaaatattaatcatttga 43681958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 35312299 - 35312249
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35312299 actaatccttccattttgtcattgcaaatattaatcatttgaaaaatggtc 35312249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 10019696 - 10019646
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  10019696 actaatccttccattttgccattgcaaatattaatcatttgaaaaatggtc 10019646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 24701592 - 24701539
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||||||||||||    
T  24701592 actaatccttccattttgccattacaaatattaaccatttgaaaaatggtccta 24701539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 30830454 - 30830401
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| |||||||||| |||||||| |||||||||||||||| |||||||||    
T  30830454 actaatcattccattttgccattgcaaatattaatcatttgaaatatggtccta 30830401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 46545054 - 46545001
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||| ||||||    
T  46545054 actaatccttccattttgccactgcaaatattaatcatttgaaaaatagtccta 46545001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 48380742 - 48380795
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||| | || || |||||  |||||||||||||||||||||||||    
T  48380742 actaatccttccaatctgccagtgcaaaaattaatcatttgaaaaatggtccta 48380795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 52455076 - 52455028
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    ||||||||||| | || || ||||| |||||||||||||||||||||||    
T  52455076 taatccttccaatctgccactgcaactattaatcatttgaaaaatggtc 52455028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 38619962 - 38619907
Alignment:
Q  60 atccttccattttgtcattgcaattattaatcatttgaaaaatggtcctattggat 115  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  38619962 atccttccattttgtcattacaaatattaatcatttgaaaaatggtcctaatggat 38619907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 9632389 - 9632434
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaa 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  9632389 actaatccttccattttgtcattgcaaatattaatcatttgaaaaa 9632434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 23514082 - 23514135
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  23514082 actaatcctttcattttgccattgcaaatattaatcatttgaaaaatggtccta 23514135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 13566475 - 13566520
Alignment:
Q  60 atccttccattttgtcattgcaattattaatcatttgaaaaatggt 105  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||    
T  13566475 atccttccattttgccattgcaaatattaatcatttgaaaaatggt 13566520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 15716199 - 15716149
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    ||||||||||| |||||| |||| ||| |||||||||||||||||||||||    
T  15716199 actaatccttctattttgccattacaaatattaatcatttgaaaaatggtc 15716149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 33497077 - 33497130
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||||| | ||||||||| |||||||||||||| | ||||||    
T  33497077 actaatccttccattttgcccttgcaattactaatcatttgaaaattcgtccta 33497130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 24529739 - 24529789
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    ||||||||||||| | || || ||||| |||||||||||||||||||||||    
T  24529739 actaatccttccaatgtgccagtgcaaatattaatcatttgaaaaatggtc 24529789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 37713776 - 37713810
Alignment:
Q  75 cattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||| ||||||||||||||||||||||||||    
T  37713776 cattgcaaatattaatcatttgaaaaatggtccta 37713810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 40422483 - 40422430
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||| | | || || ||||| ||||||||||||||||||||||||||    
T  40422483 actaatccttcaaatctgccactgcaaatattaatcatttgaaaaatggtccta 40422430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 8286995 - 8287046
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8286995 taatccttccattttgccattgcaaatattaatcatttgaaaaatggtccta 8287046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 35730984 - 35730931
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  35730984 actaatccttccattatgtcattgcaaatattaatcatttgaaaaatagtccta 35730931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 32846425 - 32846473
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  32846425 taatccttccattttgccattgcaaatattaatcatttgaaaaatggtc 32846473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 489507 - 489462
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaa 101  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  489507 actaatccttccattttgccattgcaaatattaatcatttgaaaaa 489462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 515299 - 515254
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaa 101  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  515299 actaatccttccattttgccattgcaaatattaatcatttgaaaaa 515254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 27813114 - 27813159
Alignment:
Q  60 atccttccattttgtcattgcaattattaatcatttgaaaaatggt 105  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  27813114 atccttccattttgtcattgcaaatactaatcatttgaaaaatggt 27813159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 50246181 - 50246132
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggt 105  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||||||||||    
T  50246181 actaatccttccaatctgtcactgcaaatattaatcatttgaaaaatggt 50246132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 37678171 - 37678122
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggt 105  Q
    ||||||||||||| | || || ||||| ||||||||||||||||||||||    
T  37678171 actaatccttccaatctgccactgcaaatattaatcatttgaaaaatggt 37678122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 48507475 - 48507528
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||| ||||| ||||||||||||||  ||||||| |||||||| |||||||||    
T  48507475 actaacccttctattttgtcattgcacatattaataatttgaaatatggtccta 48507528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 28310671 - 28310618
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  28310671 actaatctttccattttgccattgcaaatattaatcatttgaaaaatggtccta 28310618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 46670578 - 46670528
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||||||    
T  46670578 actaattcttccattttgtcattgcaaatattaatcatttaaaaaatggtc 46670528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 21255854 - 21255801
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||| ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  21255854 actaatgcttccattttgccattgtaaatattaatcatttgaaaaatggtccta 21255801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 38642981 - 38642930
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  38642981 taattcttccattttgccattgcaaatattaatcatttgaaaaatagtccta 38642930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 30890268 - 30890321
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| ||| |||||| ||||| || ||||||||||||||||||||||||||    
T  30890268 actaatctttctattttgccattgtaaatattaatcatttgaaaaatggtccta 30890321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 30803907 - 30803960
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||| |||||| | ||||| ||||| ||||||||| ||||||||||||||||    
T  30803907 actaattcttccaatctgtcactgcaaatattaatcaattgaaaaatggtccta 30803960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 33989075 - 33989128
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||| | || || ||||| ||||||| ||||||||||||||||||    
T  33989075 actaatccttccaatctgccactgcaaatattaattatttgaaaaatggtccta 33989128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 21260926 - 21260973
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatg 103  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  21260926 actaatccttccattttgccattgcaaatattaatcatttgaaaaatg 21260973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 22024193 - 22024140
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||| |||| || ||||| ||||||||||||||||||||||||||    
T  22024193 actaatccttccaatttgccactgcaaatattaatcatttgaaaaatggtccta 22024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 22533713 - 22533660
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||| || ||| |||||||| ||||||||||||||||||||||||||    
T  22533713 actaatccttcaatgttgccattgcaaatattaatcatttgaaaaatggtccta 22533660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 41339676 - 41339623
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||    
T  41339676 actaatcattccattttgccatcgcaaatattaatcatttgaaaaatggtccta 41339623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 17968619 - 17968669
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    ||||||| || |||||||||||||||| | |||||||||||||||||||||    
T  17968619 actaatcatttcattttgtcattgcaaatgttaatcatttgaaaaatggtc 17968669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 18934774 - 18934824
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||||||||| ||||||| |||||||| ||||| |||||||||||||||||    
T  18934774 actaatcctttcattttgccattgcaaatattagtcatttgaaaaatggtc 18934824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 34404545 - 34404594
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  34404545 actaatccttccatttgg-cattgcaaatattaatcatttgaaaaatggtc 34404594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 16118274 - 16118221
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||| |||||||| | |||||||| |||| |||||||||||||||||||||    
T  16118274 actaatctttccatttcgccattgcaaatattcatcatttgaaaaatggtccta 16118221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 8323117 - 8323164
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatg 103  Q
    |||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  8323117 actaatccttccattttgccattgaagatattaatcatttgaaaaatg 8323164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 7015832 - 7015779
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||| | || || ||||| ||||||||||||||||||| ||||||    
T  7015832 actaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtccta 7015779  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 8654168 - 8654221
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||| ||||||||||  |||||||| |||||||||||||| | ||||||    
T  8654168 actaatcctcccattttgtccctgcaattactaatcatttgaaaattcgtccta 8654221  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 27753802 - 27753749
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||| | || || ||||| ||||||||||||||||||| ||||||    
T  27753802 actaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtccta 27753749  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 5636087 - 5636139
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  5636087 actaatccttccattt-gccattgcaaatattaatcatttgaaaaatggtccta 5636139  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 27557911 - 27557959
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  27557911 taattcttccattttgccattgcaaatattaatcatttgaaaaatggtc 27557959  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 19980011 - 19980061
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    ||||||| |||||||||| | |||||| |||||||||||||||||||||||    
T  19980011 actaatcattccattttgccgttgcaaatattaatcatttgaaaaatggtc 19980061  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 47121342 - 47121392
Alignment:
Q  59 aatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||||  |||||||| ||||||| ||||||||||||||||||    
T  47121342 aatccttccattttcccattgcaaatattaattatttgaaaaatggtccta 47121392  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 5280578 - 5280541
Alignment:
Q  72 tgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5280578 tgtcattgcaaatattaatcatttgaaaaatggtccta 5280541  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 27558175 - 27558134
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttga 97  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  27558175 actaatccttccattttgccattgcaaatattaatcatttga 27558134  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 44545918 - 44545865
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||| |||||  |||||||| |||||||||||| |||||||||||||    
T  44545918 actaatccttcaattttaccattgcaaatattaatcattttaaaaatggtccta 44545865  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 15828036 - 15827991
Alignment:
Q  64 ttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||| |||| || ||||| ||||||||||||||||||||||||||    
T  15828036 ttccaatttgccactgcaaatattaatcatttgaaaaatggtccta 15827991  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 40022568 - 40022527
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttga 97  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  40022568 actaatccttccattttgtcactgcaaatattaagcatttga 40022527  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 11178 - 11130
Alignment:
Q  58 taatccttccattttgtcattgcaattattaatcatttgaaaaatggtc 106  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  11178 taattcttccattttgccattgcaaatattaatcatttgaaaaatggtc 11130  T

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Target: scaffold0279; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 10914 - 10955
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttga 97  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  10914 actaatccttccattttgccattgcaaatattaatcatttga 10955  T

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Target: scaffold0233 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 8494 - 8547
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtccta 109  Q
    ||||||||||||| | || || ||||| ||||||||||||||||||||||||||    
T  8494 actaatccttccaatctgccactgcaaatattaatcatttgaaaaatggtccta 8547  T

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Target: scaffold0202 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 14296 - 14348
Alignment:
Q  56 actaatccttccattttgtcattgcaattattaatcatttgaaaaatggtcct 108  Q
    ||||||||||||| |||| || ||||| ||||||| ||||||||||| |||||    
T  14296 actaatccttccaatttgccactgcaaatattaataatttgaaaaatcgtcct 14348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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