View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_35 (Length: 528)
Name: NF1343_high_35
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 71 - 499
Target Start/End: Complemental strand, 40511368 - 40510940
Alignment:
| Q |
71 |
gaactgatacagaacaatggatgcatcacaggcaactccctccagaactaagagagtctattcgtaaatataatcaatataaatgggtggctacacgagg |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511368 |
gaactgatacagaacaatggatgcatcacaggcaactccctccagaactaagagagtctattcgtaaatataatcaatataaatgggtggctacacgagg |
40511269 |
T |
|
| Q |
171 |
agtagaagaagaagatctgctcaaaggacttcctctggatcttaggagagaaatcaaacgccacctttgtcttgaactagttcgaggagtaagtcattag |
270 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511268 |
agtagaagaagaagatctgctcaaaggacttccgctggatcttaggagagaaatcaaacgccacctttgtcttgaactagttcgaggagtaagtcattag |
40511169 |
T |
|
| Q |
271 |
acatcaaatttatattcatttataagaaagtttttggttccatgttgtgatctttgatattccatagaaaaccttgatgttgcgatcctgattacagtcg |
370 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511168 |
acatcaaatttatattcatttataaggaagtttttggttccatgttgtgatctttgatattccatagaaaaccttgatgttgcgatcctgattacagtcg |
40511069 |
T |
|
| Q |
371 |
catatcnnnnnnnaaagaaaaaagtattgaaacaatttgtaaagagtaacttctactataagttaaaatcagcgtctgactgaatataattttgttttta |
470 |
Q |
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|| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511068 |
cagatctttttttaaagaaaaaagtattgaaacagtttgtaaagagtaacttctactataagttaaaatcagcgtctgactgaatataattttgttttta |
40510969 |
T |
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| Q |
471 |
ataatttatcaagtttagcatctctataa |
499 |
Q |
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| T |
40510968 |
ataatttatcaagtttagcatctctataa |
40510940 |
T |
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Back To:
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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 71 - 266
Target Start/End: Original strand, 21613136 - 21613331
Alignment:
| Q |
71 |
gaactgatacagaacaatggatgcatcacaggcaactccctccagaactaagagagtctattcgtaaatataatcaatataaatgggtggctacacgagg |
170 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||| |||||||||| | || | ||||| || |||||||||||||| | ||||||||||| |
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| T |
21613136 |
gaactgacacagaacaatggatgcatcacagacaactacctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgagg |
21613235 |
T |
|
| Q |
171 |
agtagaagaagaagatctgctcaaaggacttcctctggatcttaggagagaaatcaaacgccacctttgtcttgaactagttcgaggagtaagtca |
266 |
Q |
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||||| |||||| ||| |||| ||||||||| |||||||| | ||||| || |||||||||||||||||||||||||||||| |||| ||||| |
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| T |
21613236 |
cgtagatgaagaatctcttctcagaggacttccattggatcttcgaagagacattaaacgccacctttgtcttgaactagttcgaagagtgagtca |
21613331 |
T |
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