View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_38 (Length: 523)
Name: NF1343_high_38
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 285 - 510
Target Start/End: Complemental strand, 52250160 - 52249935
Alignment:
| Q |
285 |
ggacagggcaggggttagggacactttcttgaaattcttgtctattccatttaaaaactgcacttactagtttgaaacactgttatgattgttggcataa |
384 |
Q |
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| T |
52250160 |
ggacagggcaggggttagggaccctttcttgaaattcttgtctattccatttaaaaactgcacttactagtttgaaacactgttatgattgttggcataa |
52250061 |
T |
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| Q |
385 |
atttgtacatcatggggaatggagtattgaacaactattttcctctaccaggcgtagagaatcggagttcaaatttcctgctattaagagattattcata |
484 |
Q |
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| T |
52250060 |
atttgtacatcatggggaatggagtattgaacaactattttcctctaccaggcatagagaatcggagttcaaatttcctgctattaagagattattcata |
52249961 |
T |
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| Q |
485 |
gtgaatgccactttgaacctgaagta |
510 |
Q |
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| T |
52249960 |
gtgaatggcactttgaacctgaagta |
52249935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 52250348 - 52250204
Alignment:
| Q |
97 |
aacaagtactgaggtatgtttggtttgaagtagatgtaacaaacaaacaaacaccaatccatgttgttttgttgtgtcccatagtgtttgacccttgacc |
196 |
Q |
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| T |
52250348 |
aacaagtactaaggtatgtttggtttgaagtagatgtaacaaacaaacaaacaccaatccatgttgttttgttgtgtcccatagtgtttgacccttgacc |
52250249 |
T |
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| Q |
197 |
gttgaaactctagctcactagttccctatcaagattacacatgtg |
241 |
Q |
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| T |
52250248 |
cttgaaactctagctcactagttccctatcaagattacacatgtg |
52250204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 41120499 - 41120418
Alignment:
| Q |
383 |
aaatttgtacatcatggggaatggagtattgaacaactattttcctctaccaggcgtagagaatcggagttcaaatttcctg |
464 |
Q |
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| T |
41120499 |
aaatatgtacatcgtcgggtatggagtattgaacacctattattctctaccaaccagagagaatcagagttaaaatttcctg |
41120418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 41126902 - 41126837
Alignment:
| Q |
399 |
gggaatggagtattgaacaactattttcctctaccaggcgtagagaatcggagttcaaatttcctg |
464 |
Q |
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| T |
41126902 |
gggaatggagtattgaacacctattattctctaccaaccagagagaatcagagttaaaatttcctg |
41126837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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