View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_high_45 (Length: 490)
Name: NF1343_high_45
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 122 - 457
Target Start/End: Complemental strand, 5442902 - 5442563
Alignment:
| Q |
122 |
tttcaaccaatttaacttgttttaaaattttgtaccacaagtttaaagactctaggcttattggtattgtgatagatgtttaacggtatacatttgtccc |
221 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5442902 |
tttcaaccaatttaacttgttttcaaattttgtaccacaagtttgaagactctaggattattggtattgtgatagatgtttaacggtatacatttgtccc |
5442803 |
T |
|
| Q |
222 |
aatttgtaaaataagatagatgaaaacacttttatatggataaaatatgataaannnnnnnnnnnnnnn----gcaaaagcaataaaaccatgattagaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5442802 |
aatttgtaaaataagatagatgaaaacacttttatatggataaaatatgataatttttttttttttgttttttgcaaaagcaataaaaccatgattagaa |
5442703 |
T |
|
| Q |
318 |
tcttaatttttggttgggttataatgagaatgataactaaggggccccttatctcctaatgtgagtcacgcatttgtttccctctcatctcaatccattt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5442702 |
tcttaatttttggttgggttataatgagaatgataactaaggggccccttatctcctaatgtgagtcacgcatttgtttccctctcatctcaatccattt |
5442603 |
T |
|
| Q |
418 |
ctaatctataaggcagataagcacttgcatcactctccct |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5442602 |
ctaatctataaggcagataagcacttgcatcactctccct |
5442563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 31581832 - 31581864
Alignment:
| Q |
6 |
aaaatatccattggatttgaatgcaacagctag |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31581832 |
aaaatatccattggatttgaatgcaacagctag |
31581864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University