View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_5 (Length: 783)
Name: NF1343_high_5
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 2353648 - 2353775
Alignment:
| Q |
18 |
ttgttattttaaactctcgacactgatattttgaaggctcaagatcatattaatttgatgttgtttacataattttatgctatcttctgtaaatttttat |
117 |
Q |
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| T |
2353648 |
ttgttattttaaactctcgacactgatattttgaaggctcaggatcatattaatttgatgttgtttacataattttatgctatcttctgcaaatttttat |
2353747 |
T |
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| Q |
118 |
gcttccttctgtcaatttcgttgttctg |
145 |
Q |
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| T |
2353748 |
gtttccttctgtcaatttcgttattctg |
2353775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 2353773 - 2353893
Alignment:
| Q |
177 |
ctgataataaattgaagactaactcttgatagcatcgaagactaaatcctaagaggtttgactcatacctcccgatgctataaagcaagggaattttaga |
276 |
Q |
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| T |
2353773 |
ctgataatagattgaagactaactcttgatagcatcgaagactaaatcctaagaggtttgactcatacctccagatgctataaagcaagggaaatttaga |
2353872 |
T |
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| Q |
277 |
ctacttgagaggtctataaac |
297 |
Q |
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| T |
2353873 |
ctacttgagaggtctataaac |
2353893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 635
Target Start/End: Original strand, 3569326 - 3569391
Alignment:
| Q |
570 |
tgagtttttcatcaattcggattataacatccaaacaaaaaagtaattcaaattttataagctgaa |
635 |
Q |
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| T |
3569326 |
tgagttttccaccaattcggattataaaatccaaacaaataagtagctcggattttataatctgaa |
3569391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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