View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_51 (Length: 440)
Name: NF1343_high_51
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 34 - 369
Target Start/End: Complemental strand, 21314788 - 21314454
Alignment:
| Q |
34 |
ccccatcttccttgttcgacacatttactcactctacgagattattcatgtatttgtcctcgacaatacttttctctccccacaagaccattaagcttat |
133 |
Q |
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| T |
21314788 |
ccccatcttccttgttcgacacatttactcactctacgagattattcatgtatttgtcctcgacaacacttttctctccccacaagaacattaagcttat |
21314689 |
T |
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| Q |
134 |
tgtcctcataaacacatctactttccatatgagactatgcatgtaattgactttgacaatactttttgctatccccttgagaccatgaagcaaatagtca |
233 |
Q |
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| T |
21314688 |
tgtcctcagaaacacatctactttccatatgagactatgaatgtaattgactttgacaatactttt-gctatccccttgagaccatgaagcaaatagtca |
21314590 |
T |
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| Q |
234 |
tcgaaaaaacattttctcgtggtgagactataaagttaattgcactcacaataacttttctctcctcaagagataatgaaacaaattgtactcgacaata |
333 |
Q |
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| T |
21314589 |
tcgaaaatacattttctcgtggcgagactataaagttaattgcactcacaataacttttctctcctcaagagataatgaaacaaattgtactcgaccata |
21314490 |
T |
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| Q |
334 |
tattttctctccgtgcaagacaattatcctcaataa |
369 |
Q |
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|||||||||||||||||||| |||||||||| |||| |
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| T |
21314489 |
tattttctctccgtgcaagaaaattatcctcgataa |
21314454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 21314378 - 21314318
Alignment:
| Q |
366 |
ataacatttttccccctgcaagctcaaattcaccactcttatacaacaagattgatgatgt |
426 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21314378 |
ataacattttttcccctgcaagctcaaattcaccactcttatacaacaagattgatgatgt |
21314318 |
T |
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