View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_53 (Length: 436)
Name: NF1343_high_53
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 33 - 425
Target Start/End: Complemental strand, 10562300 - 10561908
Alignment:
| Q |
33 |
ttggagatgaaacagattctacttcttgtgggggcaaagttagagcacataattactcgattaggccaggagtcggtagcgaaggaatatccaactgaac |
132 |
Q |
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| T |
10562300 |
ttggtgatgaaacagattctacttcttgtgggggcaaagttagagcacataatcactcgattaggccaggagtcggtagcgaaggaatatccaactgaac |
10562201 |
T |
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| Q |
133 |
gagtgaagccatcagatgaatacttttggtttaaccgcccggccattgtcctcgacttacttcacttcactttgtttcaaaactcttttgagatcgcgtt |
232 |
Q |
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| T |
10562200 |
gagtgaagccatcagatgaatacttttggtttaaccgcccggccattgtcctcgacttacttcacttcactttgtttcagaactcttttgagatcgcgtt |
10562101 |
T |
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| Q |
233 |
tttcttttggatttgggtgagtgttttcactctaaatttcactttcaaatcaaagaaaatataattttcaattgtatcttatactcttacagacagggcg |
332 |
Q |
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| T |
10562100 |
tttcttttggatttgggtgagtgttttcactctaaactcccctttcaaatcaaaggaaatataactttcaattgtatcttctactcttacagagaggacg |
10562001 |
T |
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| Q |
333 |
ggacttggctcaatggtaaggttgttgccgtgtcacatgttcgaattctaaaacagcctctccgcgtgtggtggtaaggctgtgtacatctgt |
425 |
Q |
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| T |
10562000 |
agacttggcgcaatggtaagattgttgccgtgtcacatgttcgaattctaaatcagcctctccacgtgtggtggtaaggctgtgtacatctgt |
10561908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 24125407 - 24125464
Alignment:
| Q |
207 |
tttcaaaactcttttgagatcgcgtttttcttttggatttgggtgagtgttttcactc |
264 |
Q |
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| T |
24125407 |
tttcaaaacacttttgagagtacgtttttcttctgaatttgggtgtgtgttttcactc |
24125464 |
T |
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