View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_54 (Length: 435)
Name: NF1343_high_54
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 53561773 - 53561357
Alignment:
| Q |
7 |
aaatcctccaacattgcatcaacaagatcctcctcccacacaaaa-gatcccttctccaactaaaatcccaattacctcccaccctgccactcacccgac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53561773 |
aaatcctccaacattgcatcaacaagatcctcctcccacacaaaaagatcccttctccaactaaaatcccaattacctcccaccccgccactcacccgac |
53561674 |
T |
|
| Q |
106 |
agtccccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53561673 |
agtccccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacct |
53561574 |
T |
|
| Q |
206 |
cgtaaccctcccgttgccaacattccaagacacctccgagttaaaccaatttcaccctcctccatcgcccaacttagttacatctttccaccaccgcgaa |
305 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53561573 |
cgtaaccctcccgttgccaacattcctagacacctccgagttaaaccaatttgaccctcctccatcgcccaacttagttacatctttccaccaccgcgaa |
53561474 |
T |
|
| Q |
306 |
gcataggttgggcacacatagc-ccccgggcaacaaagatgcaccaacatcctcaccatatttctcccttaaaacatccttccacatggagccacctttt |
404 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53561473 |
gcataggttgggcacacatagccccccgggcaacaaagatgcaccaacatcctcaccatatttctccctcaaaacatccttccacatggagccacctttt |
53561374 |
T |
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| Q |
405 |
tgcaacatcctccacct |
421 |
Q |
| |
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||||||||||||||||| |
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| T |
53561373 |
tgcaacatcctccacct |
53561357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 22154312 - 22154410
Alignment:
| Q |
111 |
ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta |
209 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||||||||| | |||| || ||||| ||||| |||||| |
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| T |
22154312 |
ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta |
22154410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 22210227 - 22210325
Alignment:
| Q |
111 |
ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta |
209 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||||||||| | |||| || ||||| ||||| |||||| |
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| T |
22210227 |
ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta |
22210325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 4903223 - 4903079
Alignment:
| Q |
112 |
caataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgtaac |
211 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||||||||||||| || || |||||||||||| |||| | ||| |||||| |||||| |
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| T |
4903223 |
caataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaacggaactattacccgtccaaaacccatcccaaaagctcgtagt |
4903124 |
T |
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| Q |
212 |
cctcccgttgccaacattccaagacacctccgagttaaaccaatt |
256 |
Q |
| |
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|| ||| || ||||| ||| |||||||||||||||||||||| |
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| T |
4903123 |
ccgcccattaccaaccctccgcaacacctccgagttaaaccaatt |
4903079 |
T |
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