View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_6 (Length: 779)
Name: NF1343_high_6
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_6 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 164 - 770
Target Start/End: Complemental strand, 7527 - 6922
Alignment:
| Q |
164 |
tcatttgaacacttattttgtgcctaccaacacatggttggtagtattatatgtaaataaattagtttacatttctttagagcataatgaacataatctt |
263 |
Q |
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| T |
7527 |
tcatttgaacacttatttagtgcctaccaacacatggttggtagtattatatgtaaataaattagtttacatttctttagagcataatgaacataatctt |
7428 |
T |
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| Q |
264 |
ccttcgnnnnnnn-tgaacaaaatctaaataactcgctttagaaaactttcatctcaataatccttggtggagatgctctttaaaaagaataaacttttt |
362 |
Q |
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| T |
7427 |
ccttcgaaaaaaaatgaacaaaatctaaataactcgctttagaaaactttcatctcaataatccttggtggagatgctctttaaaaagaataaacttttt |
7328 |
T |
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| Q |
363 |
ctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgatcatgttttctgtcaaatgtgattttgctctttg-ctattattac |
461 |
Q |
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| T |
7327 |
ctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgatcatgttttctgtcaaatgtgattttgctctttgcctattattac |
7228 |
T |
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| Q |
462 |
acaagtgtttcatgctacatccaacatactccttaacacaccgctctttatttatatttgagtctatcaaattcataaacannnnnnnnnnnnnnnctat |
561 |
Q |
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| T |
7227 |
acaagtgtttcatgctacatccaacatactccttaacaaaccgctctttatttatatttgagtctatcaaattcataatcatttttaattttttttctat |
7128 |
T |
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| Q |
562 |
tattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaaccagaaaattacgagatttatattttgttggacagaaagcaaaa |
661 |
Q |
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| T |
7127 |
tattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaaccag---ataacgagatttatattttgttggacagaaagcaaaa |
7031 |
T |
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| Q |
662 |
taatagactatatatgtcataaataaataaacaaaacgacctttaaactagaagtttgcggtccctcgatattttaagatcattgatcacagccgttaaa |
761 |
Q |
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| T |
7030 |
taatagactatatatgtcataaataaataaacaaaacgacctttaaactcgaagtttgcggtccctcaatattttaagatcatcgatcacagccgttaaa |
6931 |
T |
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| Q |
762 |
ttcctatga |
770 |
Q |
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| T |
6930 |
ttcctatga |
6922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 7642 - 7538
Alignment:
| Q |
30 |
attaacacataaagaaaagtattatcagcaggttttgactcaattgaaaaatgcctaaattcatttgtgtg--taggttttcatgtgatatttgacaatc |
127 |
Q |
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| T |
7642 |
attaacacacaaagaaaagtattatccgcaggttttgactcaattgaaaaatgcctaaattcatctgtgtgtataggttttcatgtgatatttgacaatc |
7543 |
T |
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| Q |
128 |
cgtct |
132 |
Q |
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|||| |
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| T |
7542 |
agtct |
7538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 584 - 750
Target Start/End: Complemental strand, 11094 - 10924
Alignment:
| Q |
584 |
ttatctcaattggttcctttttcatcattctg-aaccagaaaattacgagatttatattttgttggacagaaagcaaaata---atagactatatatg-- |
677 |
Q |
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| T |
11094 |
ttatctcaattggtgcctttttcatcattctggaaccagaaagt---gagatttatttttccttggacagaaagcaaactaccaatagactatatatgcg |
10998 |
T |
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| Q |
678 |
tcataaataaataaacaaaacgacctttaa-actagaagtttgcggtccctcgatattttaagatcattgatca |
750 |
Q |
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|||||| | ||||||||||| ||||| | |||| |||||| ||||||| | |||||||||||||||||| |
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| T |
10997 |
tcataagtgaataaacaaaaatgccttttatactaaaagtttattgtccctcaaacttttaagatcattgatca |
10924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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