View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_60 (Length: 423)
Name: NF1343_high_60
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_60 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 33557618 - 33557880
Alignment:
| Q |
5 |
gaggagcagagaaccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccatggggatg |
104 |
Q |
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| T |
33557618 |
gaggagcagtgaaccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccttggggatg |
33557717 |
T |
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| Q |
105 |
gagattatccctaggtttagcaacagttccagcaatattcatgttcattggaggcattttttgtccagaaacaccaaacagtctcgttgaacaaggccga |
204 |
Q |
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| T |
33557718 |
gagattatccctaggtttagcaacagttccagcaatattcatgttcattggaggcattttttgtccagaaacaccaaacagtctcgttgaacaaggccga |
33557817 |
T |
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| Q |
205 |
atggatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgacgctgaattt |
267 |
Q |
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| T |
33557818 |
atggatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgatgctgaattt |
33557880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 33564835 - 33565097
Alignment:
| Q |
5 |
gaggagcagagaaccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccatggggatg |
104 |
Q |
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| T |
33564835 |
gaggagcagtgaaccaactcttccagttaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccttggggatg |
33564934 |
T |
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| Q |
105 |
gagattatccctaggtttagcaacagttccagcaatattcatgttcattggaggcattttttgtccagaaacaccaaacagtctcgttgaacaaggccga |
204 |
Q |
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| T |
33564935 |
gagattatccctaggtttagcaacagttccagcaatattcatgttcattggaggcattttttgtccagaaacaccaaacagtctcgttgaacaaggccga |
33565034 |
T |
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| Q |
205 |
atggatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgacgctgaattt |
267 |
Q |
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| T |
33565035 |
atggatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgatgctgaattt |
33565097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 43379984 - 43380180
Alignment:
| Q |
5 |
gaggagcagagaaccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccatggggatg |
104 |
Q |
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||||||||| |||||||||||| ||||||||||| ||||| ||||||||| | |||||| | || ||||||| || |||| |||||| ||||||||||| |
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| T |
43379984 |
gaggagcagtgaaccaactctttcaattaacaacttgtttgggaattttggtagctaacttggtaaattatgcaaccgagagaattcatccatggggatg |
43380083 |
T |
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| Q |
105 |
gagattatccctaggtttagcaacagttccagcaatattcatgttcattggaggcattttttgtccagaaacaccaaacagtctcgttgaacaaggc |
201 |
Q |
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| T |
43380084 |
gagattatctcttggtttagcagtagttccagcaattgttatgtttattggtggtttgttgtgtcctgagacaccaaacagtcttgtggaacaaggc |
43380180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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