View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_61 (Length: 420)
Name: NF1343_high_61
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_61 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 34 - 414
Target Start/End: Original strand, 45269682 - 45270059
Alignment:
| Q |
34 |
cgtttttgtgtatgaagcttgcagtaacacttctgaataatatatttgaatgatcaaatgaaaattgaagaagcttatactttcattcgagcaaattttc |
133 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45269682 |
cgtttttgtgtatgaagcttgcagtaacgcttctgaataatatatttgaatgatcaaatgaaaattgaag---cttatactttcattcgagcaaattttc |
45269778 |
T |
|
| Q |
134 |
gtttgtatttctggtggatcccctgtacaaaaacaggaaagattattacaaagaataacaatttgtctccgagccaagcatcacattcacactctctgta |
233 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
45269779 |
gtttgtatttctggtggatctcctgtacaaaaacaggaaagattattacaaagaataacaatttgtctccgagccatgcatcacattcacactctctata |
45269878 |
T |
|
| Q |
234 |
gcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacattagtttaattttca |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45269879 |
gcaggagaaccttttaatttattatgagcccaaacgatggattctataagttcttgccaataaccacgcccgatgaatagaaacattagtttaattttca |
45269978 |
T |
|
| Q |
334 |
agctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45269979 |
agctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagc |
45270059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 34 - 397
Target Start/End: Original strand, 45273222 - 45273604
Alignment:
| Q |
34 |
cgtttttgtgtatgaagcttgcagtaacacttctgaataat-atatttgaatgatcaaatgaaaattgaa----gaagcttatactttcattcgagcaaa |
128 |
Q |
| |
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||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||| |
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| T |
45273222 |
cgtttttgtgtatgaagtttgcagtaacgtttctgtataattatatttgaatgatcaaaggaaaaatgaaaattgaagcttatactatcattcgagcaaa |
45273321 |
T |
|
| Q |
129 |
ttttcgtttgtatttctggtggatcccctgtacaaaaacaggaaagattattacaaagaataacaatttgtctccgagccaagcatcacattcacactct |
228 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45273322 |
ttttcatttgtattactggtggatcccctgtacaaaaacagcaaagattattacaaagaataacaatttgtctccgagccatgcatcacattcacactct |
45273421 |
T |
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| Q |
229 |
ct--------------gtagcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaataga |
314 |
Q |
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|| ||| |||||| | |||||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||| |||||||| |
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| T |
45273422 |
ctgagagttacactgagtaacaggagcaacttttaatttattatgagcccaaacgatggattcaataagtttatgccaataaccacggccgctgaataga |
45273521 |
T |
|
| Q |
315 |
aacattagtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||| |
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| T |
45273522 |
aacattagtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt |
45273604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 45278918 - 45279090
Alignment:
| Q |
58 |
taacacttctgaataat--atatttgaatgatcaaatgaaaattgaa---gaagcttatactttcattcgagcaaattttcgtttgtatttctggtggat |
152 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||| ||||| || |||||||| ||| | |||||||||||||||| |||||||||||||||||| |
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| T |
45278918 |
taacacttctgaataatttatatttgaatgataaaaaaaaaatgaaaattgaagcttaaactataattcgagcaaattttcatttgtatttctggtggat |
45279017 |
T |
|
| Q |
153 |
cccctgtacaaaaacaggaaagattattacaaagaataacaatttgtctccgagccaagcatcacattcacac |
225 |
Q |
| |
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| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45279018 |
ctcatgtacaaaaataggaaagataattacaaagaataacaatttgtctccgagccatgcatcacattcacac |
45279090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 45281635 - 45281758
Alignment:
| Q |
104 |
aagcttatactttcattcgagcaaattttcgtttgtatttctggtggatcccctgtacaaaaacaggaaagattattacaaagaataacaatttgtctcc |
203 |
Q |
| |
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||||||| ||| | |||||||||||||||| ||||||||||||| ||||| | |||| ||||| | ||||||| |||||||||||||||||||||||||| |
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| T |
45281635 |
aagcttaaactataattcgagcaaattttcatttgtatttctgggggatctcatgtataaaaatacgaaagataattacaaagaataacaatttgtctcc |
45281734 |
T |
|
| Q |
204 |
gagccaagcatcacattcacactc |
227 |
Q |
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|| ||| ||||||||||||||||| |
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| T |
45281735 |
gacccatgcatcacattcacactc |
45281758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 45281773 - 45281848
Alignment:
| Q |
322 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||| |
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| T |
45281773 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt |
45281848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 45292942 - 45293101
Alignment:
| Q |
74 |
tatatttgaatgatcaaatgaaaattgaa----gaagcttatactttcattcgagcaaattttcgtttgtatttctggtggatcccctgtacaaaaacag |
169 |
Q |
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|||||||||||||||||| ||||| |||| |||||||| ||| | |||||||||||||||| ||||||||||||||||||| |||| | ||| | || |
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| T |
45292942 |
tatatttgaatgatcaaaagaaaaatgaaaattgaagcttaaactataattcgagcaaattttcatttgtatttctggtggatctcctggaaaaatatag |
45293041 |
T |
|
| Q |
170 |
gaaagattattacaaagaataacaatttgtctccgagccaagcatcacattcacactctct |
230 |
Q |
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| ||| | |||||||||||||| ||||||| | | |||| |||||||||||||||||||| |
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| T |
45293042 |
g-aaggtaattacaaagaataataatttgtttatgtgccatgcatcacattcacactctct |
45293101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 45301902 - 45302061
Alignment:
| Q |
74 |
tatatttgaatgatcaaatgaaaattgaa----gaagcttatactttcattcgagcaaattttcgtttgtatttctggtggatcccctgtacaaaaacag |
169 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||| ||| | |||||||||||||||| ||||||||||||||||||| |||| | ||| | || |
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|
| T |
45301902 |
tatatttgaatgatcaaaagaaaaatgaaaattgaagcttaaactataattcgagcaaattttcatttgtatttctggtggatctcctggaaaaatatag |
45302001 |
T |
|
| Q |
170 |
gaaagattattacaaagaataacaatttgtctccgagccaagcatcacattcacactctct |
230 |
Q |
| |
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| ||| | |||||||||||||| ||||||| | | |||| |||||||||||||||||||| |
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| T |
45302002 |
g-aaggtaattacaaagaataataatttgtttatgtgccatgcatcacattcacactctct |
45302061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 45293113 - 45293188
Alignment:
| Q |
322 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||| | ||||||||| |||| ||||||||| |
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|
| T |
45293113 |
gtttaattttcaagctttgaagccaaggtaattaggaacattaagaccagtcaaccattcggctgcggacttgggt |
45293188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 45302073 - 45302148
Alignment:
| Q |
322 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||| | ||||||||| |||| ||||||||| |
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| T |
45302073 |
gtttaattttcaagctttgaagccaaggtaattaggaacattaagaccagtcaaccattcggctgcggacttgggt |
45302148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 13218295 - 13218205
Alignment:
| Q |
231 |
gtagcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacatta |
321 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
13218295 |
gtagcaggagcaacttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacatta |
13218205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 54180853 - 54180929
Alignment:
| Q |
245 |
ttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacatta |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
54180853 |
ttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacatta |
54180929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 239414 - 239504
Alignment:
| Q |
231 |
gtagcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacatta |
321 |
Q |
| |
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|||||||||| | |||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||| ||| |||||| |||||||| |
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|
| T |
239414 |
gtagcaggagcaacttttaatttgttatgagcccaaacgatagattcaatgagttcttgccaataaccacggccgctgaataaaaacatta |
239504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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