View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_high_63 (Length: 412)

Name: NF1343_high_63
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_high_63
NF1343_high_63
[»] chr1 (3 HSPs)
chr1 (104-384)||(42457095-42457373)
chr1 (8-109)||(42456854-42456955)
chr1 (59-92)||(32801035-32801068)
[»] chr5 (1 HSPs)
chr5 (66-109)||(11056980-11057023)
[»] chr3 (2 HSPs)
chr3 (66-108)||(20261426-20261468)
chr3 (64-100)||(25119602-25119638)
[»] chr2 (2 HSPs)
chr2 (66-108)||(5328988-5329030)
chr2 (67-100)||(32505484-32505517)
[»] chr7 (1 HSPs)
chr7 (73-109)||(4171575-4171611)
[»] chr4 (1 HSPs)
chr4 (64-92)||(34671554-34671582)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 104 - 384
Target Start/End: Original strand, 42457095 - 42457373
Alignment:
Q  104 taaaaaataacataaacatttattgattatcaaatttgnnnnnnnnnnnnnnngcactattatgttggtgtcatgtcaataaagaaagttagctagaaca 203  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||    
T  42457095 taaaaaataacataaacatttattgattatcaaatttgttttttttttttt--gcactattatgttggtgtcatgtcaataaagaaagttagctagaaca 42457192  T
Q  204 gttttcccattgccactaaacagggcattgtctaatctctggccaaccagtagtcgtcgatggtgatgacttttgtttagaaactccttcctctcggaat 303  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42457193 gttttcccattgccgctaaacagggcattgtctaatctctggccaaccagtagtcgtcgatggtgatgacttttgtttagaaactccttcctctcggaat 42457292  T
Q  304 ctggtcacatagaaatatgattgtattttggtcacatagtcttgtattgtatgaaatggaaattgtagtgtgcatcatggt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42457293 ctggtcacatagaaatatgattgtattttggtcacatagtcttgtattgtatgaaatggaaattgtagagtgcatcatggt 42457373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 42456854 - 42456955
Alignment:
Q  8 ccaataatatcataaaagtatggtcgatcaaatcaataataaataaatttattatggatttttctatcatgtgcaaacttgcatagtataaaaagttaaa 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||||    
T  42456854 ccaatattatcataaaagtatggtcgatcaaatcaataataaataaatttatgatggatttttctatcatgcgcaaacttacatagtataagaagttaaa 42456953  T
Q  108 aa 109  Q
    ||    
T  42456954 aa 42456955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 32801035 - 32801068
Alignment:
Q  59 ttatggatttttctatcatgtgcaaacttgcata 92  Q
    |||| |||||||||||||||||||||||||||||    
T  32801035 ttatagatttttctatcatgtgcaaacttgcata 32801068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 11057023 - 11056980
Alignment:
Q  66 tttttctatcatgtgcaaacttgcatagtataaaaagttaaaaa 109  Q
    ||||| |||||||||||||||||||||| |||||||| ||||||    
T  11057023 tttttttatcatgtgcaaacttgcatagcataaaaagataaaaa 11056980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 20261426 - 20261468
Alignment:
Q  66 tttttctatcatgtgcaaacttgcatagtataaaaagttaaaa 108  Q
    |||||||||||||||| |||||||||||||||| |||| ||||    
T  20261426 tttttctatcatgtgcgaacttgcatagtataagaagtcaaaa 20261468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 25119602 - 25119638
Alignment:
Q  64 gatttttctatcatgtgcaaacttgcatagtataaaa 100  Q
    |||||||| |||||||||||||||| |||||||||||    
T  25119602 gatttttcgatcatgtgcaaacttgtatagtataaaa 25119638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 5328988 - 5329030
Alignment:
Q  66 tttttctatcatgtgcaaacttgcatagtataaaaagttaaaa 108  Q
    |||||||||||||| |||||||||||||| |||||||| ||||    
T  5328988 tttttctatcatgtccaaacttgcatagtttaaaaagtcaaaa 5329030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 32505517 - 32505484
Alignment:
Q  67 ttttctatcatgtgcaaacttgcatagtataaaa 100  Q
    ||||||||||| ||||||||||||||||||||||    
T  32505517 ttttctatcatttgcaaacttgcatagtataaaa 32505484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 4171611 - 4171575
Alignment:
Q  73 atcatgtgcaaacttgcatagtataaaaagttaaaaa 109  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  4171611 atcatgtgcgaacttgcatagtataagaagttaaaaa 4171575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 34671554 - 34671582
Alignment:
Q  64 gatttttctatcatgtgcaaacttgcata 92  Q
    |||||||||||||||||||||||||||||    
T  34671554 gatttttctatcatgtgcaaacttgcata 34671582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University