View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_69 (Length: 392)
Name: NF1343_high_69
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 40179473 - 40179801
Alignment:
| Q |
8 |
gagcagagaatggtgatccagttgaaggtgtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatag |
107 |
Q |
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| T |
40179473 |
gagcagagaatggtgatcaagttgaaggtgtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatag |
40179572 |
T |
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| Q |
108 |
tgacaaaatggaatggagcactgaggaggaaaacaatgagacaaacatgaatggaaatatggttaacagtgcattcaaagcaccaaatgctaagaaatcc |
207 |
Q |
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| T |
40179573 |
tgacaaaatggaatggagcactgaggaggaaaacaatgagacaaacat---------tatggttaacagtccattcaaagcaccaaatgctaagaaatcc |
40179663 |
T |
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| Q |
208 |
aacattgtaggggggctcaaagtgacacctcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179664 |
aacattgtaggggggctcaaagtgacacctcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagt |
40179763 |
T |
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| Q |
308 |
ttcgtaattatatttcaatcaatttgattgtactattg |
345 |
Q |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
40179764 |
ttcgtaattatatttcagtcaatttgattgtactattg |
40179801 |
T |
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