View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_71 (Length: 382)
Name: NF1343_high_71
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_71 |
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| [»] scaffold1858 (1 HSPs) |
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Alignment Details
Target: scaffold1858 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold1858
Description:
Target: scaffold1858; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 211 - 372
Target Start/End: Complemental strand, 1292 - 1131
Alignment:
| Q |
211 |
gaattattcataaatatcaatatgatacgtaatcacgaagagtatagggcgtgaattctgaatttgtgtttcttaaatttgccaattttgtcttttttct |
310 |
Q |
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| T |
1292 |
gaattattcataaatatcaatatgatacgtaatcacgaagagtaaagggcgtgaattctgaatttgtgtttcttaaatttgccaattttgtcttttttct |
1193 |
T |
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| Q |
311 |
ctcccatacaagtacaaaggatgcatggctaaggattaaacatgtagttctatggtcctatg |
372 |
Q |
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| T |
1192 |
ctcccatacaagtacaaaggatgcatggctaaggattaaacatgtaggtctatggttctatg |
1131 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 31581832 - 31581864
Alignment:
| Q |
6 |
aaaatatccattggatttgaatgcaacagctag |
38 |
Q |
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| T |
31581832 |
aaaatatccattggatttgaatgcaacagctag |
31581864 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 3939957 - 3939993
Alignment:
| Q |
79 |
tatattctagatatgcaaaagtagcatgggatagttt |
115 |
Q |
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| T |
3939957 |
tatattctagttatgctaaagtagcatgggatagttt |
3939993 |
T |
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