View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_72 (Length: 377)
Name: NF1343_high_72
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 32 - 364
Target Start/End: Original strand, 1353092 - 1353424
Alignment:
| Q |
32 |
ctattttcatatcaactttctttcacaccttttcaaaatgccgttagtggaataggagaataaaatgaaaatcaaccttacatggtgatcctgaaaagga |
131 |
Q |
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| T |
1353092 |
ctattttcatatcaactttctttcacaccttttcaaaatgccgttagtggaataggagaataaaatgaaaatcaaccttacatggtgatcctgaaaagga |
1353191 |
T |
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| Q |
132 |
gaaggagtgatgtggataatataagtggtcaaaaatcttgaaagaactcataaaagtaactaaaagcaaaatttatttagaatgtagaatggttgctgct |
231 |
Q |
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| T |
1353192 |
gaaggagtgatgtggataatataagtgatcaaaaatcttgaaagaactcataaaagtaactaaaagcaaaatttatttagaatgtagaatggttgctgct |
1353291 |
T |
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| Q |
232 |
tgttcaatagtcctcaaattttctctagctaaagactgatcatgtcttctatttctataaaattgagttatcttctctatctgcaccaccctttgagaaa |
331 |
Q |
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| T |
1353292 |
tgttcaatagtcctcaaattttctctagctaaagactgatcatgtcttctatttctataaaattgagttatcttctctatctgcaccaccctttgagaaa |
1353391 |
T |
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| Q |
332 |
aatcagatggttcttcaacttcttctcatgttc |
364 |
Q |
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| T |
1353392 |
aatcagatggttcttcaacttcatctcatgttc |
1353424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 1356072 - 1356156
Alignment:
| Q |
32 |
ctattttcatatcaactttctttcacacc-----ttttcaaaatgccgttagtggaataggagaataaaatgaaaatcaacctta |
111 |
Q |
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||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1356072 |
ctatttttatatcaactttctttcacacgatctattttcataatgccgttagtggaataggagaataaaatgaaaatcaacctta |
1356156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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