View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_75 (Length: 365)
Name: NF1343_high_75
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_75 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 25 - 365
Target Start/End: Complemental strand, 22554129 - 22553789
Alignment:
| Q |
25 |
ctggtgacccttttgctgcaatggaagcttcaaaaatcattggtgaagcatgtgaaaaacatggnnnnnnncttgttgttaatcatggtattgatgctaa |
124 |
Q |
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| T |
22554129 |
ctggtgacccttttgctgcaatggaagcttcaaaaatcattggtgaagcatgtgaaaaacatggtttttttcttgttgttaatcatggtattgatgctaa |
22554030 |
T |
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| Q |
125 |
gttaatagaacatgctcatagttacatggatggtttctttgagaatcccctgtctcaaaaacagagagcacagaggaaaataggagaacattgtggttat |
224 |
Q |
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| T |
22554029 |
attaatagaacatgctcatagttacatggatggtttctttgagaatcccctgtctcaaaaacagagagcacagaggaaaataggagaacattgtggttat |
22553930 |
T |
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| Q |
225 |
gctagtagtttcactggaagattctcctcaaaacttccatggaaagaaacactttcctttcaattttcagatgagaaaaaatcaacaaatattgttaaag |
324 |
Q |
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| T |
22553929 |
gctagtagtttcactggaagattctcctcaaaacttccatggaaagaaacactttcttttcaattttcagatgagaaaaactcaccaaatattgttaaag |
22553830 |
T |
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| Q |
325 |
actacctttacaacacattaggggaagattttgaggaattt |
365 |
Q |
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| T |
22553829 |
actacctttgcaacacattaggggaagattttgaggaattt |
22553789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 37 - 313
Target Start/End: Original strand, 46102472 - 46102748
Alignment:
| Q |
37 |
ttgctgcaatggaagcttcaaaaatcattggtgaagcatgtgaaaaacatggnnnnnnncttgttgttaatcatggtattgatgctaagttaatagaaca |
136 |
Q |
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| T |
46102472 |
ttgcagcaatggaagcatcaaaggttgttggtgaagcttgtaaaaaacatggtttttttcttgttgtcaatcatggaattgatgaaaagttgatatctga |
46102571 |
T |
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| Q |
137 |
tgctcatagttacatggatggtttctttgagaatcccctgtctcaaaaacagagagcacagaggaaaataggagaacattgtggttatgctagtagtttc |
236 |
Q |
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||||||| || |||||||| ||| |||||| |||||| ||||| ||||||||||| ||||| |||| ||| || || ||||||||||||||||||||| |
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| T |
46102572 |
tgctcatgctttcatggatgatttttttgagcttcccctttctcagaaacagagagctcagagaaaaacaggggagcactgtggttatgctagtagtttc |
46102671 |
T |
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| Q |
237 |
actggaagattctcctcaaaacttccatggaaagaaacactttcctttcaattttcagatgagaaaaaatcaacaaa |
313 |
Q |
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| T |
46102672 |
actggcagattctcttccaagcttccttggaaagagacactttcctttcaattctcagctgatgaaaaatcaccaaa |
46102748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 12874009 - 12873931
Alignment:
| Q |
207 |
ggagaacattgtggttatgctagtagtttcactggaagattctcctcaaaacttccatggaaagaaacactttcctttc |
285 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| || || |||||||| ||||| ||||||||||| |||| |
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| T |
12874009 |
ggagaacattgtggttatgctaatagtttcattggaagattttcttccaaacttccttggaaggaaacactttcttttc |
12873931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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