View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_77 (Length: 362)
Name: NF1343_high_77
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_77 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 47 - 266
Target Start/End: Original strand, 2252341 - 2252560
Alignment:
| Q |
47 |
tcacatatactgtgtctggctagccagtttatcataaaaacaagttggaacagtttccctaacagaatttagtgcaatcagctttataaattagacgaat |
146 |
Q |
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| T |
2252341 |
tcacatatactgtgtctggctagccagtttatcataaaaacaagttggaacagtttccctaacagaatttggtgcaatcagctttataaattagacgaat |
2252440 |
T |
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| Q |
147 |
attgcaagtacggtatttctataaatgaacaacataaataacaaagataaggactgattttctatcaactatcttctggagataatgatataaccagaaa |
246 |
Q |
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| T |
2252441 |
attgcaagtacggtatttctataaatgaacaacataaataacaaagataaggactgatttcctatcaactatcttctggagataatgatataaccagaaa |
2252540 |
T |
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| Q |
247 |
tttgtactcctagttacaaa |
266 |
Q |
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|||||||||||||||||||| |
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| T |
2252541 |
tttgtactcctagttacaaa |
2252560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 18948467 - 18948404
Alignment:
| Q |
159 |
gtatttctataaatgaacaacataaataac-aaagataaggactgattttctatcaactatctt |
221 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||| |
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| T |
18948467 |
gtatttctataaatgaacaatataaataacaaaagataaggattgattttttatcaaatatctt |
18948404 |
T |
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