View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_80 (Length: 349)
Name: NF1343_high_80
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_80 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 52472822 - 52472500
Alignment:
| Q |
1 |
cccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaatttgaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472822 |
cccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaatttgaagca |
52472723 |
T |
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| Q |
101 |
tcattaatggcaatatcaaattgcttaaaactttggaattttatcagaatttcatctttgatatttgcatggtaagaactgccaccgccagcttccttct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472722 |
tcattaatggcaatatcaaattgcttaaaacttcggaattttatcagaatttcatctttgatatttgcatggtaagaactgccaccgccagcttccttct |
52472623 |
T |
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| Q |
201 |
gtaatagagcagagcacattcatctacatcaatataatgttccgaacaatatcaatgcagtcattagaatgttagaaatggagggtcagaataggggcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472622 |
gtaatagagcagagcacattcatctacatcaata------------------caatgtagtcattagaatgttagaaatggagggtcagaataggggcca |
52472541 |
T |
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| Q |
301 |
ggtggagaagtggagaacacaaaggaaaaagtgttggatttgggcccta |
349 |
Q |
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| T |
52472540 |
g--------gtggagaacacaaaggaaaaagtgttggatttgggcccta |
52472500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 38793294 - 38793374
Alignment:
| Q |
8 |
aatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattg |
88 |
Q |
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| T |
38793294 |
aatccttctccaaaatctttctttctttccggatttctttagcccaattttcttgatgctgttcaggaaataggttcattg |
38793374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7763376 - 7763454
Alignment:
| Q |
1 |
cccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata |
79 |
Q |
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|||||||||| ||||||||||||| |||| |||| || ||||| |||||||||||||| ||||| ||| |||||||||| |
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| T |
7763376 |
cccggcaaatgcttctccaaaatcctccactcttcctggatttttttagcccaattctttggattctgctcaggaaata |
7763454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 5839682 - 5839769
Alignment:
| Q |
4 |
ggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaa |
91 |
Q |
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||||||| ||||| ||||||||||| ||||||| |||| ||||||||||||| | ||||||||| | |||||| ||||||||||| |
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| T |
5839682 |
ggcaaattgttctctaaaatcttccactctttctggattcttttagcccaattcctttgatgctgttaatgaaataggttcattgtaa |
5839769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 33369711 - 33369633
Alignment:
| Q |
1 |
cccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata |
79 |
Q |
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||||| |||| || ||||||||||||||| |||| || ||||| |||||||||| ||| ||||| ||| |||||||||| |
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| T |
33369711 |
cccggaaaatgctcctccaaaatcttccactcttcctggatttttttagcccaactctttggattctgatcaggaaata |
33369633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 5839826 - 5839891
Alignment:
| Q |
108 |
tggcaatatcaaattgcttaaaactttggaattttatcagaatttcatctttgatatttgcatggt |
173 |
Q |
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| T |
5839826 |
tggcaatatcgaatttcttaaaacttccaaatttcctcagaatttcatctttgaaatttgcatggt |
5839891 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11719542 - 11719487
Alignment:
| Q |
1 |
cccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaatt |
56 |
Q |
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| T |
11719542 |
cccggcaaactctcctccaaaatcttccactctttctggattactttagcccaatt |
11719487 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1004549 - 1004459
Alignment:
| Q |
1 |
cccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaa |
91 |
Q |
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||||||||||||||||||||||| | ||| |||| || |||| | | | |||||| | ||||||||||| ||||||| ||| |||||||| |
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| T |
1004549 |
cccggcaaatccttctccaaaatttcccagtcttcctggattgcatccgaccaattatttggatgctgttaaggaaatgagtacattgtaa |
1004459 |
T |
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