View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_81 (Length: 344)
Name: NF1343_high_81
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_81 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 40064337 - 40064028
Alignment:
| Q |
9 |
agcaaaggtgataggattgatattgatttgaccaacnnnnnnngagtttattatttatttgtaatgatttaaacgtcagcttgtgccaagtaacaatctt |
108 |
Q |
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| T |
40064337 |
agcaaaggtgataggattgatatcgatttgaccaaaaaaaaaagagtttattatttatttgtaatgatttaaacgtctgcttgtgccaagtaacaatctt |
40064238 |
T |
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| Q |
109 |
gagatacaagttagatgtt---tgtaaatactttgacgctcaagtagatgtattgaaatgatagaggtaatatacattgtgttgtggtttaatgacctat |
205 |
Q |
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||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40064237 |
gagatacaagttagatgttgtttgtaaatacttcgaagctcaagtagaggtattgaaatgatagaggtgatatacattgtgttgtggtttaatgacctat |
40064138 |
T |
|
| Q |
206 |
atatacggttgagaaaggagttattttcgtagtcgttgagacgcgattacggaaggtggatgttagtattgaaattgtcgttctcgttctgcatttatgg |
305 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
40064137 |
atatacaattgagaaaggagttattttcgtagtcgttgagacgcgattacggaaggtggatattagtattgaaattgtcgttcttgttttgcatttatgg |
40064038 |
T |
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| Q |
306 |
atctgcaatg |
315 |
Q |
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|||||||||| |
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| T |
40064037 |
atctgcaatg |
40064028 |
T |
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