View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_high_84 (Length: 341)

Name: NF1343_high_84
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_high_84
NF1343_high_84
[»] chr8 (33 HSPs)
chr8 (1-108)||(9300190-9300297)
chr8 (1-108)||(13335151-13335255)
chr8 (1-51)||(32678392-32678442)
chr8 (1-107)||(45425743-45425848)
chr8 (65-108)||(39482546-39482589)
chr8 (1-55)||(44761571-44761625)
chr8 (1-42)||(34948764-34948805)
chr8 (1-41)||(11977013-11977053)
chr8 (13-108)||(4428440-4428531)
chr8 (65-108)||(10953871-10953914)
chr8 (65-108)||(10961876-10961919)
chr8 (1-104)||(17719335-17719436)
chr8 (13-108)||(17823856-17823948)
chr8 (66-105)||(21216240-21216279)
chr8 (65-108)||(22771974-22772017)
chr8 (65-108)||(34948824-34948867)
chr8 (77-108)||(44761643-44761674)
chr8 (65-103)||(1875878-1875916)
chr8 (13-55)||(7172899-7172941)
chr8 (67-97)||(26513746-26513776)
chr8 (1-55)||(40109697-40109751)
chr8 (1-38)||(21216178-21216215)
chr8 (1-42)||(29226605-29226646)
chr8 (1-42)||(31271019-31271060)
chr8 (13-50)||(42886990-42887027)
chr8 (65-105)||(396750-396790)
chr8 (1-41)||(10098068-10098108)
chr8 (65-105)||(10180086-10180126)
chr8 (65-105)||(14855075-14855115)
chr8 (1-41)||(27294136-27294176)
chr8 (1-41)||(31082618-31082658)
chr8 (15-51)||(40028501-40028537)
chr8 (14-42)||(40996455-40996483)
[»] chr1 (32 HSPs)
chr1 (1-108)||(35367736-35367841)
chr1 (1-108)||(39864045-39864150)
chr1 (1-108)||(6785190-6785295)
chr1 (13-108)||(24991744-24991838)
chr1 (1-108)||(4659711-4659815)
chr1 (25-108)||(23169096-23169175)
chr1 (1-108)||(26256167-26256272)
chr1 (15-108)||(12039016-12039107)
chr1 (1-105)||(52429279-52429383)
chr1 (1-56)||(9307611-9307666)
chr1 (13-108)||(35682885-35682977)
chr1 (1-51)||(2572458-2572508)
chr1 (1-108)||(20209919-20210024)
chr1 (1-55)||(37539112-37539166)
chr1 (1-55)||(44707839-44707893)
chr1 (1-54)||(22856316-22856369)
chr1 (1-54)||(37177822-37177875)
chr1 (3-51)||(10495828-10495876)
chr1 (1-108)||(16395125-16395229)
chr1 (16-55)||(29778490-29778529)
chr1 (65-108)||(33733403-33733446)
chr1 (1-108)||(37506058-37506163)
chr1 (1-56)||(38787325-38787380)
chr1 (13-55)||(6023740-6023782)
chr1 (1-55)||(27721517-27721571)
chr1 (1-42)||(15699120-15699161)
chr1 (13-42)||(25089177-25089206)
chr1 (14-51)||(36701910-36701947)
chr1 (14-51)||(36718014-36718051)
chr1 (1-42)||(49224065-49224106)
chr1 (1-41)||(8896411-8896451)
chr1 (65-105)||(13579761-13579801)
[»] chr7 (33 HSPs)
chr7 (1-108)||(21350708-21350814)
chr7 (1-108)||(11373511-11373616)
chr7 (14-108)||(37245631-37245723)
chr7 (1-108)||(41506148-41506253)
chr7 (1-108)||(34947441-34947546)
chr7 (1-108)||(23670426-23670532)
chr7 (1-104)||(24516372-24516473)
chr7 (13-55)||(46478388-46478430)
chr7 (65-105)||(24166934-24166974)
chr7 (13-108)||(759186-759279)
chr7 (1-107)||(2459413-2459517)
chr7 (1-108)||(19271816-19271920)
chr7 (1-108)||(21390235-21390341)
chr7 (14-108)||(28103671-28103766)
chr7 (1-108)||(28202392-28202497)
chr7 (13-108)||(48608808-48608900)
chr7 (13-55)||(47045566-47045608)
chr7 (1-42)||(3178287-3178328)
chr7 (1-54)||(7463206-7463259)
chr7 (13-108)||(25571361-25571453)
chr7 (13-105)||(34100642-34100732)
chr7 (14-54)||(37850823-37850863)
chr7 (65-108)||(31930647-31930690)
chr7 (1-55)||(22738693-22738747)
chr7 (77-107)||(33819154-33819184)
chr7 (1-51)||(49101659-49101709)
chr7 (15-108)||(16904318-16904411)
chr7 (13-42)||(40076323-40076352)
chr7 (1-53)||(8592523-8592575)
chr7 (1-41)||(13961965-13962005)
chr7 (3-51)||(30865963-30866011)
chr7 (3-51)||(32346137-32346185)
chr7 (15-51)||(38391744-38391780)
[»] chr2 (22 HSPs)
chr2 (1-108)||(17695262-17695369)
chr2 (1-108)||(35313821-35313926)
chr2 (1-108)||(3323346-3323451)
chr2 (1-54)||(35242371-35242424)
chr2 (13-108)||(5789734-5789826)
chr2 (1-108)||(14523446-14523551)
chr2 (13-108)||(34120523-34120616)
chr2 (1-108)||(36354517-36354621)
chr2 (13-108)||(45235513-45235608)
chr2 (1-51)||(8947126-8947176)
chr2 (1-55)||(28186199-28186253)
chr2 (13-56)||(7438938-7438981)
chr2 (13-108)||(7494924-7495018)
chr2 (65-108)||(11742665-11742708)
chr2 (15-54)||(16377748-16377787)
chr2 (1-108)||(37322363-37322467)
chr2 (13-51)||(1206777-1206815)
chr2 (1-42)||(15359161-15359202)
chr2 (1-42)||(18853275-18853316)
chr2 (13-42)||(31448779-31448808)
chr2 (1-42)||(36794282-36794323)
chr2 (1-41)||(17346436-17346476)
[»] chr4 (41 HSPs)
chr4 (1-107)||(49746895-49747000)
chr4 (1-108)||(35311305-35311412)
chr4 (1-108)||(35380415-35380521)
chr4 (1-108)||(51624720-51624825)
chr4 (1-55)||(17237378-17237432)
chr4 (1-55)||(32884786-32884840)
chr4 (13-108)||(49176028-49176122)
chr4 (1-108)||(22129976-22130082)
chr4 (1-105)||(40122936-40123039)
chr4 (13-55)||(6643754-6643796)
chr4 (1-51)||(21240786-21240836)
chr4 (1-51)||(33790813-33790863)
chr4 (13-55)||(47464459-47464501)
chr4 (1-51)||(54506777-54506827)
chr4 (13-50)||(10672643-10672680)
chr4 (13-50)||(10886283-10886320)
chr4 (13-54)||(43237229-43237270)
chr4 (13-54)||(53412094-53412135)
chr4 (65-105)||(2942791-2942831)
chr4 (13-108)||(4972507-4972599)
chr4 (13-53)||(18741568-18741608)
chr4 (13-49)||(25142473-25142509)
chr4 (1-53)||(53346746-53346798)
chr4 (65-108)||(2066725-2066768)
chr4 (13-108)||(38405196-38405290)
chr4 (1-108)||(47773101-47773206)
chr4 (14-45)||(49579273-49579304)
chr4 (65-108)||(52859938-52859981)
chr4 (13-51)||(6609750-6609788)
chr4 (13-51)||(28911250-28911288)
chr4 (1-55)||(34360640-34360694)
chr4 (1-55)||(36985771-36985825)
chr4 (1-51)||(49428424-49428474)
chr4 (78-108)||(54921772-54921802)
chr4 (1-54)||(16821413-16821466)
chr4 (14-50)||(10699504-10699540)
chr4 (14-50)||(10913274-10913310)
chr4 (65-105)||(21698653-21698693)
chr4 (1-41)||(30682278-30682318)
chr4 (1-41)||(31370382-31370422)
chr4 (15-51)||(35251888-35251924)
[»] chr3 (31 HSPs)
chr3 (3-108)||(44301495-44301599)
chr3 (1-108)||(43253939-43254045)
chr3 (13-108)||(10366737-10366830)
chr3 (15-108)||(36460506-36460597)
chr3 (1-108)||(36476518-36476623)
chr3 (1-55)||(12904849-12904903)
chr3 (13-55)||(24703647-24703689)
chr3 (13-107)||(38137534-38137626)
chr3 (13-54)||(11632067-11632108)
chr3 (9-54)||(30711059-30711104)
chr3 (15-51)||(3313243-3313279)
chr3 (15-55)||(8679144-8679184)
chr3 (1-41)||(37497491-37497531)
chr3 (1-104)||(39043833-39043932)
chr3 (77-108)||(37773116-37773147)
chr3 (69-108)||(38795278-38795317)
chr3 (1-51)||(1778632-1778682)
chr3 (77-107)||(24569246-24569276)
chr3 (1-51)||(37695742-37695792)
chr3 (14-51)||(11905811-11905848)
chr3 (13-42)||(19823009-19823038)
chr3 (1-42)||(23004458-23004499)
chr3 (1-42)||(30190736-30190777)
chr3 (67-108)||(33491501-33491542)
chr3 (1-42)||(45710848-45710889)
chr3 (1-42)||(53560215-53560256)
chr3 (15-51)||(3901239-3901275)
chr3 (3-51)||(5323015-5323063)
chr3 (13-41)||(28690870-28690898)
chr3 (1-41)||(29024041-29024081)
chr3 (1-41)||(41351640-41351680)
[»] chr5 (26 HSPs)
chr5 (1-108)||(8698242-8698348)
chr5 (1-107)||(40530298-40530403)
chr5 (13-108)||(6315863-6315956)
chr5 (13-106)||(19929882-19929973)
chr5 (13-54)||(29570378-29570419)
chr5 (15-108)||(4818484-4818576)
chr5 (1-108)||(6615954-6616059)
chr5 (1-107)||(9515668-9515775)
chr5 (1-108)||(41496014-41496119)
chr5 (3-53)||(2232145-2232195)
chr5 (1-107)||(6753732-6753836)
chr5 (1-51)||(7828000-7828050)
chr5 (1-51)||(27542784-27542834)
chr5 (13-55)||(32439857-32439899)
chr5 (1-42)||(6754027-6754068)
chr5 (14-51)||(42803707-42803744)
chr5 (13-52)||(41492248-41492287)
chr5 (1-51)||(37101279-37101329)
chr5 (1-51)||(40899907-40899957)
chr5 (13-50)||(30512772-30512809)
chr5 (13-50)||(30553112-30553149)
chr5 (13-54)||(41480137-41480178)
chr5 (1-41)||(4441020-4441060)
chr5 (1-41)||(21060629-21060669)
chr5 (1-41)||(39325862-39325902)
chr5 (13-41)||(41478784-41478812)
[»] chr6 (19 HSPs)
chr6 (13-107)||(21425644-21425738)
chr6 (1-108)||(181491-181595)
chr6 (13-108)||(29363238-29363333)
chr6 (3-108)||(21010105-21010210)
chr6 (15-51)||(13087519-13087555)
chr6 (1-108)||(34657637-34657745)
chr6 (25-108)||(27367524-27367607)
chr6 (25-108)||(27457871-27457954)
chr6 (13-56)||(31283488-31283531)
chr6 (1-108)||(11656021-11656127)
chr6 (13-56)||(3720328-3720371)
chr6 (65-108)||(21478232-21478275)
chr6 (23-53)||(10923475-10923505)
chr6 (15-53)||(15058104-15058142)
chr6 (1-55)||(24983524-24983578)
chr6 (13-55)||(28106016-28106058)
chr6 (67-108)||(23142602-23142643)
chr6 (13-54)||(31894297-31894338)
chr6 (1-53)||(15046111-15046162)
[»] scaffold0159 (1 HSPs)
scaffold0159 (13-108)||(34107-34199)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-41)||(5389-5429)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-108)||(252892-252984)
[»] scaffold0302 (1 HSPs)
scaffold0302 (10-49)||(16089-16128)
[»] scaffold1809 (1 HSPs)
scaffold1809 (15-108)||(774-864)
[»] scaffold0016 (1 HSPs)
scaffold0016 (4-53)||(76279-76328)


Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9300190 - 9300297
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||        ||||||||| | ||||||||||||||||||||||||    
T  9300190 agttagtggagtagttaagttgaatgaaattcaataaataaggatataatagtggggaaagaaataataaatactgcattggtattgtaaagtgacaatt 9300289  T
Q  101 attttgag 108  Q
    ||||||||    
T  9300290 attttgag 9300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13335255 - 13335151
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||  ||||||| |||         |||||||| || |||||||||| |||||||||||||    
T  13335255 agttagtagagtagttaagtttgatgaaattcaataaatcagggtataataatgg---aaaaaataataaatgttgcattggtattctaaagtgacaatt 13335159  T
Q  101 attttgag 108  Q
    ||||||||    
T  13335158 attttgag 13335151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32678442 - 32678392
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  32678442 agttagtggagtagttaagttggatgaaattaaataaataagaatataata 32678392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45425743 - 45425848
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| | |||||||| |||||||||||||||||||  ||||||||| ||        |||||||| || ||||| ||||||||||||||||||    
T  45425743 agttagtggagtaattaagttgtatgaaattcaataaataagggtataatagt-ggaaaaaaaataataaatgttacattgatattgtaaagtgacaatt 45425841  T
Q  101 attttga 107  Q
    |||||||    
T  45425842 attttga 45425848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 39482589 - 39482546
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  39482589 taataaatactgcattggtattgtaaagtgacaattattttgag 39482546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44761571 - 44761625
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||  |||||||||||    
T  44761571 agttagtggagtagttaagttggatgaaattcaataaatgagggtataatagtgg 44761625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34948764 - 34948805
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  34948764 agttagtggagtagttaagttggatgaaattcaataaataag 34948805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11977013 - 11977053
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  11977013 agttagtagagtagttaagttagatgaaattcaataaataa 11977053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 4428440 - 4428531
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||| ||||||||||||||||||| | |||||||||||         |||||| | || ||||| |||| |||||||||||||||||||||    
T  4428440 agttaagttagatgaaattcaataaataaaagtataatagtgg----aaaaataataattgttacattgatattctaaagtgacaattattttgag 4428531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 10953871 - 10953914
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| || ||||||||| ||||||||||||||||||||||    
T  10953871 taataaatgttgcattggtatcgtaaagtgacaattattttgag 10953914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 10961876 - 10961919
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| || ||||||||| ||||||||||||||||||||||    
T  10961876 taataaatgttgcattggtatcgtaaagtgacaattattttgag 10961919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17719335 - 17719436
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||| |||||||||   ||||||| |||         |||||||| || |||||||||| |||||||||||||    
T  17719335 agttagtggagtagttaagttggatgaaatttaataaataaaggtataataatgg--aaaaagataataaatgttgcattggtattctaaagtgacaatt 17719432  T
Q  101 attt 104  Q
    ||||    
T  17719433 attt 17719436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 17823948 - 17823856
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||| ||||||||| | |||||||||||         |||||||||||  |||| |||| |||| ||||||||||||||||    
T  17823948 agttaagttggatgaaattaaataaataatagtataatagtgg---aggaaataataaatattgtattgttattataaattgacaattattttgag 17823856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 21216240 - 21216279
Alignment:
Q  66 aataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  21216240 aataaatgttgcattggtattgtaaagtgacaattatttt 21216279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 22771974 - 22772017
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| || |||||||||| |||||||||||||||||||||    
T  22771974 taataaatgttgcattggtattctaaagtgacaattattttgag 22772017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 34948824 - 34948867
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||    
T  34948824 taataaatattgcattggtattctaaagtaacaattattttgag 34948867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 108
Target Start/End: Original strand, 44761643 - 44761674
Alignment:
Q  77 cattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||||    
T  44761643 cattggtattgtaaagtgacaattattttgag 44761674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 1875878 - 1875916
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatt 103  Q
    |||||||| || |||||||||||||||||||||||||||    
T  1875878 taataaatgttgcattggtattgtaaagtgacaattatt 1875916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 7172941 - 7172899
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||| |||||||||||||||||||  |||||||||||    
T  7172941 agttaagttgaatgaaattcaataaataagggtataatagtgg 7172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 26513776 - 26513746
Alignment:
Q  67 ataaatatttcattggtattgtaaagtgaca 97  Q
    |||||||||||||||||||||||||||||||    
T  26513776 ataaatatttcattggtattgtaaagtgaca 26513746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40109751 - 40109697
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||| |||||| | |  |||||||||||||||||||||||| ||||||    
T  40109751 agttagtagagtagttaaatagagtgaaattcaataaataagaatatattagtgg 40109697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21216178 - 21216215
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaa 38  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  21216178 agttagtggagtagttaagttggatgaaattcaataaa 21216215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29226605 - 29226646
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||    
T  29226605 agttagtggagtagttaagttagatgaaattcaataaataag 29226646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31271060 - 31271019
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||    
T  31271060 agttagtggagtagttaagttggataaaattcaataaataag 31271019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 42887027 - 42886990
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataat 50  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  42887027 agttaagttggataaaattcaataaataagagtataat 42886990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 396750 - 396790
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    |||||||| || |||||||||| ||||||||||||||||||    
T  396750 taataaatgttgcattggtattctaaagtgacaattatttt 396790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10098068 - 10098108
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| |||||||||||||||| ||||||||||||    
T  10098068 agttagtggagtagttaagttggatgaagttcaataaataa 10098108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 10180086 - 10180126
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    |||||||| || |||||||||| ||||||||||||||||||    
T  10180086 taataaatgttgcattggtattctaaagtgacaattatttt 10180126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 14855075 - 14855115
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  14855075 taataaatattgcattaatattgtaaagtgacaattatttt 14855115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27294136 - 27294176
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| | |||||||||||||||||||||||||||    
T  27294136 agttagtggagtaattaagttggatgaaattcaataaataa 27294176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31082658 - 31082618
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  31082658 agttagtggagtagttaagttggatgaaatttaataaataa 31082618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 40028537 - 40028501
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  40028537 ttaagttagatgaaattcaataaacaagaatataata 40028501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 40996455 - 40996483
Alignment:
Q  14 gttaagttggatgaaattcaataaataag 42  Q
    |||||||||||||||||||||||||||||    
T  40996455 gttaagttggatgaaattcaataaataag 40996483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35367841 - 35367736
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||  ||||||||||          |||||||| |||||||||||||||||||||||||||    
T  35367841 agttagtggagtagttaagttagatgaaattcaataaataagggtataatagtg--aaaaagactaataaatgtttcattggtattgtaaagtgacaatt 35367744  T
Q  101 attttgag 108  Q
    ||||||||    
T  35367743 attttgag 35367736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39864150 - 39864045
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  |||||||||||         |||||||| || ||||| ||||||||||||||||||    
T  39864150 agttagtggagtagttaagttggatgaaattcaataaataagggtataatagtgg--aaaaaaataataaatgttgcattgatattgtaaagtgacaatt 39864053  T
Q  101 attttgag 108  Q
    ||||||||    
T  39864052 attttgag 39864045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6785295 - 6785190
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||  |||||||||||         |||||||| || ||| ||||||||||||||||||||    
T  6785295 agttagtggagtagttaagtttgatgaaattcaataaataagggtataatagtgg--aaaaaaataataaatgttgcataggtattgtaaagtgacaatt 6785198  T
Q  101 attttgag 108  Q
    ||||||||    
T  6785197 attttgag 6785190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 24991744 - 24991838
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||   ||||||||||||        |||||||| || |||| |||||||||||||||||||||||||||    
T  24991744 agttaagttggatgaaattcaataaataaaggtataatagtggg-aaaaaaataataaatgttgcattagtattgtaaagtgacaattattttgag 24991838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4659815 - 4659711
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| | |||||||| ||||||||||||||||||| ||||||||||||         |||  ||| || ||||||||||||||||||||||||    
T  4659815 agttagtggagtaattaagttgaatgaaattcaataaataaggatataatagtgg---aaaaaataaataatgttgcattggtattgtaaagtgacaatt 4659719  T
Q  101 attttgag 108  Q
    ||||||||    
T  4659718 attttgag 4659711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 23169096 - 23169175
Alignment:
Q  25 tgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||| |||||||||||         |||||||| || ||||||||||||||||||||||||||||||||    
T  23169096 tgaaattcaataaataagagtataatagtgg----aaaagtaataaatgttgcattggtattgtaaagtgacaattattttgag 23169175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26256167 - 26256272
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||         ||||||||  | |||||||||| ||||||| |||||    
T  26256167 agttaatagagtagttaagttggatgaaagtcaataaagaagaatataatagtgg--aaagaattaataaatgatacattggtattataaagtggcaatt 26256264  T
Q  101 attttgag 108  Q
    ||||||||    
T  26256265 attttgag 26256272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 12039107 - 12039016
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||| |||||||||||||||  |||||||||||         |||||||| || |||| |||||||||||||||||||||||||||    
T  12039107 ttaagttggatgtaattcaataaataagggtataatagtgg--aaaataataataaatgttgcattagtattgtaaagtgacaattattttgag 12039016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 52429383 - 52429279
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||| |||||||||| ||||||||  ||||||| || |        |||||||| || ||||| ||||||||||||||||||    
T  52429383 agttagtggagtagttaagttgaatgaaattcattaaataagggtataataatgagaaaaaaaataataaatgttgcattgatattgtaaagtgacaatt 52429284  T
Q  101 atttt 105  Q
    |||||    
T  52429283 atttt 52429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9307666 - 9307611
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtggg 56  Q
    ||||||| ||| |||||||||||||||||||||||||||||   ||||||||||||    
T  9307666 agttagtggagtagttaagttggatgaaattcaataaataaaggtataatagtggg 9307611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 35682885 - 35682977
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||  |||||||||||         ||||||||||| ||||| |||| |||| || |||||||||||||    
T  35682885 agttaagttggatgaaattcaataaataagggtataatagtgg---aaaaaataataaatattgcattgatattctaaattggcaattattttgag 35682977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2572508 - 2572458
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| |||||||||| |||||||||||||||||| |||||||||    
T  2572508 agttagtggagtagttaagttgaatgaaattcaataaataaaaatataata 2572458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20209919 - 20210024
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||||||||| |||||||||||||  ||| ||| ||||        ||||||||  | |||||||||| |||||||||||||    
T  20209919 agttagtggagtagttaagttggatgaagttcaataaataagggtattataatggg--aaaaaataataaatgctgcattggtattctaaagtgacaatt 20210016  T
Q  101 attttgag 108  Q
    ||||||||    
T  20210017 attttgag 20210024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37539166 - 37539112
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||| ||||||||| ||||||||||||||||||||  ||| |||||||    
T  37539166 agttagtagagtagttaagtttgatgaaattcaataaataagggtatcatagtgg 37539112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44707839 - 44707893
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||  ||||||||||||||||||||||||||||||||   |||||||||||    
T  44707839 agttagtgaagcagttaagttggatgaaattcaataaataaaggtataatagtgg 44707893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22856316 - 22856369
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||| ||| ||||||| ||||||||||||||||||||| | ||||||||||    
T  22856316 agttagtggagtagttaagctggatgaaattcaataaataaaagtataatagtg 22856369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37177875 - 37177822
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    |||||||| || ||||||||||||| ||||| ||||||||||| ||||||||||    
T  37177875 agttagtatagtagttaagttggataaaattaaataaataagagtataatagtg 37177822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 10495876 - 10495828
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||| ||| |||||||||||||||||||||||||||||  ||||||||    
T  10495876 ttagtggagtagttaagttggatgaaattcaataaataaatatataata 10495828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16395125 - 16395229
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| |||||||||||||||||||  |||||||| ||          ||||||||  | |||||||||| |||||||||||||    
T  16395125 agttagtggagtagttaagttagatgaaattcaataaataatgatataataatg---aaaaaaataataaatcctacattggtattctaaagtgacaatt 16395221  T
Q  101 attttgag 108  Q
    ||||||||    
T  16395222 attttgag 16395229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 29778490 - 29778529
Alignment:
Q  16 taagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  29778490 taagttggataaaattcaataaataataatataatagtgg 29778529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 33733403 - 33733446
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||  |||||||||||| |||||||||||||||||||||    
T  33733403 taataaatgcttcattggtattctaaagtgacaattattttgag 33733446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37506163 - 37506058
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||| |||||||||||||||||||  ||| ||| |||         |||||||| || ||||| |||| |||||||||||||    
T  37506163 agttagtggagtagttaagttgaatgaaattcaataaataagggtattataatgg--aaaaaaataataaatgttgcattgatattctaaagtgacaatt 37506066  T
Q  101 attttgag 108  Q
    ||||||||    
T  37506065 attttgag 37506058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38787380 - 38787325
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtggg 56  Q
    ||||||| ||| |||||| |||||||||||||||||||||||  ||||||| ||||    
T  38787380 agttagtggagtagttaaattggatgaaattcaataaataagggtataataatggg 38787325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6023740 - 6023782
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||||||||||||||||| || ||| |||||||||||    
T  6023740 agttaagttggatgaaattcaatacatgagagtataatagtgg 6023782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27721571 - 27721517
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||  |||||| |||||| ||||||||||||||| | |||||||||||    
T  27721571 agttagtagaatagttaaattggataaaattcaataaataaaagtataatagtgg 27721517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15699161 - 15699120
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  15699161 agttagtggagtagttaagttggatgaagttcaataaataag 15699120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 25089177 - 25089206
Alignment:
Q  13 agttaagttggatgaaattcaataaataag 42  Q
    ||||||||||||||||||||||||||||||    
T  25089177 agttaagttggatgaaattcaataaataag 25089206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 36701947 - 36701910
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataata 51  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  36701947 gttaagtttgatgaaattcaataaataagagtataata 36701910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 36718051 - 36718014
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataata 51  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  36718051 gttaagtttgatgaaattcaataaataagagtataata 36718014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49224065 - 49224106
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  49224065 agttagtggagtagttaagttggatgaagttcaataaataag 49224106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8896411 - 8896451
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  8896411 agttagtggagtggttaagttggatgaaattcaataaataa 8896451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 13579761 - 13579801
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  13579761 taataaatattgcatcggtattttaaagtgacaattatttt 13579801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21350708 - 21350814
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||| ||        ||||||||  | ||||||||||||||||||||||||    
T  21350708 agttagtggagtagttaagttggatgaaattcaataaataagggtataatagt-ggaaaaaaaataataaatgctgcattggtattgtaaagtgacaatt 21350806  T
Q  101 attttgag 108  Q
    ||||||||    
T  21350807 attttgag 21350814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11373511 - 11373616
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||        ||||||||  | ||||| ||||||||||| ||||||    
T  11373511 agttagtggagtagttaagttggatgaaattcaataaataagagtataatagtggg--aaaaaataataaatgctgcattgatattgtaaagtaacaatt 11373608  T
Q  101 attttgag 108  Q
    ||||||||    
T  11373609 attttgag 11373616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 37245723 - 37245631
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||  |||||||||| |        |||||||| || ||||||||||||||||||||||||||||||||    
T  37245723 gttaagttggatgaaattcaataaataagggtataatagtgagaaaaaa--taataaatgttgcattggtattgtaaagtgacaattattttgag 37245631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 41506148 - 41506253
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |  |        ||||||||||| ||||| ||||||||||||| ||||    
T  41506148 agttagtggagtagttaagttggatgaaattcaataaataagagtataatatt--gaaaaaaattaataaatattgcattgatattgtaaagtgataatt 41506245  T
Q  101 attttgag 108  Q
    ||||||||    
T  41506246 attttgag 41506253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 34947546 - 34947441
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||  ||||||| |||         |||||||| || |||||||||| |||||||||||||    
T  34947546 agttagtggagtagttaagttggatgaaattcaataaatgagggtataataatgg--aaaaaaataataaatgttgcattggtattctaaagtgacaatt 34947449  T
Q  101 attttgag 108  Q
    ||||||||    
T  34947448 attttgag 34947441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23670532 - 23670426
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||| ||||||||||| |||||||| |||        ||||||||  | |||| |||||||||||||||||||    
T  23670532 agttagtggagtagttaagtttgatgaaatttaataaataagagtataatagcggg-gggaaaataataaatgatgcattagtattgtaaagtgacaatt 23670434  T
Q  101 attttgag 108  Q
    ||||||||    
T  23670433 attttgag 23670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24516372 - 24516473
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||||||||||||||||||||||  ||| |||||||||        |||||||| || ||||| ||||||||| ||||||||    
T  24516372 agttagtggagtagttaagttggatgaaattcaataaataaagataaaatagtggg--aaaagataataaatgttgcattgatattgtaaaatgacaatt 24516469  T
Q  101 attt 104  Q
    ||||    
T  24516470 attt 24516473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 46478388 - 46478430
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  46478388 agttaagttggatgaaattcaataaataagagtataatagtgg 46478430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 24166974 - 24166934
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  24166974 taataaatattgcattggtattgtaaagtgacaattatttt 24166934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 759186 - 759279
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||  ||||||| |||         ||||||||  | |||||||||| |||||||||||||||||||||    
T  759186 agttaagttggatgaaattcaataaataagggtataataatgg--aaaaaaataataaatgctgcattggtattctaaagtgacaattattttgag 759279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2459517 - 2459413
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||| |||||||||||||||||||||  |||||||||  |        ||||||||  | |||||||||||||||||| |||||    
T  2459517 agttagtggagtagttaagtaggatgaaattcaataaataagggtataatagt--gaaaaaaaataataaatgctgcattggtattgtaaagtgtcaatt 2459420  T
Q  101 attttga 107  Q
    |||||||    
T  2459419 attttga 2459413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 19271816 - 19271920
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||| | ||||||||||  ||||||| |||         |||||||| || ||||||||||||||||| ||||||    
T  19271816 agttagtggagtagttaagttggatgaaaattaataaataagggtataatattgg---aaaaaataataaatgttgcattggtattgtaaagtaacaatt 19271912  T
Q  101 attttgag 108  Q
    ||||||||    
T  19271913 attttgag 19271920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21390341 - 21390235
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||  ||||||| | ||        |||||||  || |||||||||| |||||||||||||    
T  21390341 agttagtggagtagttaagttagatgaaattcaataaataagggtataataat-ggaaaaaaaataataaacgttgcattggtattataaagtgacaatt 21390243  T
Q  101 attttgag 108  Q
    ||||||||    
T  21390242 attttgag 21390235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 28103766 - 28103671
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataatagtgg-gnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||  |||||||||||          |||||||| || || | |||||||||||||||||||||||||||    
T  28103766 gttaagttggatgaaattcaataaataagcgtataatagtggaaaaaaaaaataataaatgttgcaattgtattgtaaagtgacaattattttgag 28103671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28202392 - 28202497
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| |||         ||||||||  |  ||||||||| |||||||||||||    
T  28202392 agttagtggagtagtaaagttggatgaaattcaataaataagagtataataatgg--aaaaaaataataaatgctgtattggtattctaaagtgacaatt 28202489  T
Q  101 attttgag 108  Q
    ||||||||    
T  28202490 attttgag 28202497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 48608900 - 48608808
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||| ||||||| |||         ||||||||| | ||||  |||| |||||||||||||||||||||    
T  48608900 agttaagttggatgaaattcaataaataagagtataataatgg---aaaaaataataaatactgcattaatattttaaagtgacaattattttgag 48608808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 47045566 - 47045608
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  47045566 agttaagttggatgaaattcaacaaataagagtataatagtgg 47045608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3178287 - 3178328
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  3178287 agttagtggagtagttaagttggatgaaattcaataaataag 3178328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7463259 - 7463206
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||| ||| |||||||||||||||||||||||||||||  ||| |||||||    
T  7463259 agttagtggagtagttaagttggatgaaattcaataaataaagatagaatagtg 7463206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 25571453 - 25571361
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||  ||||||| |           |||||||| || |||||||||| |||||||||||||||||||||    
T  25571453 agttaagttggatgaaattcaataaataagggtataataat---taaaaaaataataaatgttgcattggtattctaaagtgacaattattttgag 25571361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 34100642 - 34100732
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||||||||||| ||||||||||||||  |||||||||  |        |||||||| || |||| ||||||||||||||||||||||||    
T  34100642 agttaagttggatgacattcaataaataagggtataatagt--gaaaaaacataataaatgttgcattagtattgtaaagtgacaattatttt 34100732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 37850823 - 37850863
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  37850823 gttaagttagatgaaaatcaataaataagaatataatagtg 37850863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 31930647 - 31930690
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| |||||||| |||| |||||||||||||||||||||    
T  31930647 taataaatgtttcattgatattctaaagtgacaattattttgag 31930690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22738747 - 22738693
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||  ||||||||||||||||||| |||||||||   |||||||||||    
T  22738747 agttagtagattagttaagttggatgaaatttaataaataaaggtataatagtgg 22738693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 33819184 - 33819154
Alignment:
Q  77 cattggtattgtaaagtgacaattattttga 107  Q
    |||||||||||||||||||||||||||||||    
T  33819184 cattggtattgtaaagtgacaattattttga 33819154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49101709 - 49101659
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| |||||||||| |||||||||||||||||| | |||||||    
T  49101709 agttagtggagtagttaagttgaatgaaattcaataaataaaagtataata 49101659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 16904411 - 16904318
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||| ||||||||||||||||  |||||||||||         ||||||||| | ||||| |||| ||||  |||||||||||||||    
T  16904411 ttaagttggatcaaattcaataaataagggtataatagtggaaaaaataataataaatactacattgatattctaaaaagacaattattttgag 16904318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 40076352 - 40076323
Alignment:
Q  13 agttaagttggatgaaattcaataaataag 42  Q
    ||||||||||||||||||||||||||||||    
T  40076352 agttaagttggatgaaattcaataaataag 40076323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8592523 - 8592575
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagt 53  Q
    ||||||| ||| ||| ||||| ||||||||| ||||||||||| |||||||||    
T  8592523 agttagtggagtagtaaagttagatgaaatttaataaataagagtataatagt 8592575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13962005 - 13961965
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  13962005 agttagtggagtagttaagttggatgaaatttaataaataa 13961965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 30866011 - 30865963
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||| ||| ||||||||| |||||||||||||||||||  ||||||||    
T  30866011 ttagtggagtagttaagttagatgaaattcaataaataaagatataata 30865963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 32346137 - 32346185
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||| ||| |||||||||| |||||||||||||||||||  |||||||    
T  32346137 ttagtggagtagttaagttgaatgaaattcaataaataagggtataata 32346185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 38391780 - 38391744
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||||||||||||||||||||| | |||||||    
T  38391780 ttaagttggatgaaattcaataaataaaagtataata 38391744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 17695369 - 17695262
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||         ||||||||  | ||||| |||| |||||||||||||    
T  17695369 agttagtagagtagttaagttggatgaaattcaataaataagggtataatagtggaaaaaataataataaatgctgcattgatattctaaagtgacaatt 17695270  T
Q  101 attttgag 108  Q
    ||||||||    
T  17695269 attttgag 17695262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35313926 - 35313821
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||         |||||||| || ||||  ||||||||||||||||||    
T  35313926 agttagtggagtagttaagtttgatgaaattcaataaataagagtataatagtgg--aaaaaagtaataaatgttgcattattattgtaaagtgacaatt 35313829  T
Q  101 attttgag 108  Q
    ||||||||    
T  35313828 attttgag 35313821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3323346 - 3323451
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||| | ||||||||||        ||||||||  | ||||||||||||||||||| ||||    
T  3323346 agttagtggagtagttaagttggatgaaattcaataagtaagagtgtaatagtggg--aaaaaataataaatgctgcattggtattgtaaagtgagaatt 3323443  T
Q  101 attttgag 108  Q
    ||||||||    
T  3323444 attttgag 3323451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35242371 - 35242424
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||    
T  35242371 agttagttgagtagttaagttggatgaaattcaataaataaaagtataatagtg 35242424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 5789734 - 5789826
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||   |||||||||||         ||||||||  | ||||| ||||||||||||||||||||||||||    
T  5789734 agttaagttggatgaaattcaataaataatggtataatagtgg---aaaaaataataaatgatgcattgatattgtaaagtgacaattattttgag 5789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14523446 - 14523551
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||| |||||||| |||         |||||||| || ||||| |||| |||||||||||||    
T  14523446 agttagtggagtagttaagttagatgaaattcaattaataaggatataataatgg--aaaataataataaatgttgcattgatattctaaagtgacaatt 14523543  T
Q  101 attttgag 108  Q
    ||||||||    
T  14523544 attttgag 14523551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 34120523 - 34120616
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||         ||||||||  | |||||||||| |||||||||||||||||||||    
T  34120523 agttaagttggatgaaattcaataagtaagagtataataatgg--aaaaaaataataaatgctgcattggtattttaaagtgacaattattttgag 34120616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36354517 - 36354621
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||||||||||||||||||||||   ||||||| |||         ||||||||  | |||||||||| |||||||||||||    
T  36354517 agttagtggagtagttaagttggatgaaattcaataaataatggtataataatgg---aaaaaataataaattctgcattggtattctaaagtgacaatt 36354613  T
Q  101 attttgag 108  Q
    ||||||||    
T  36354614 attttgag 36354621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 45235608 - 45235513
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||| |||||||||||||||||||| ||||| || ||          |||||||| || |||||||||| |||||||||||||||||||||    
T  45235608 agttaagtttgatgaaattcaataaataaggatatagtaatgaaaaaaataataataaatgttgcattggtattataaagtgacaattattttgag 45235513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8947126 - 8947176
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  8947126 agttagtggagtagttaagttggatgaaattcaataaataagggtataata 8947176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28186253 - 28186199
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||| |||| |||||||||| |||||||||||||||||| || ||||||||||    
T  28186253 agttagcagagtagttaagttgaatgaaattcaataaataaaaaaataatagtgg 28186199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 7438938 - 7438981
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtggg 56  Q
    |||||||||| |||||||||||||||||||  ||||||||||||    
T  7438938 agttaagttgaatgaaattcaataaataagggtataatagtggg 7438981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 7494924 - 7495018
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||  ||||||| | |         ||||||||  | |||||||||| |||||||||||||||||||||    
T  7494924 agttaagttggatgaaattcaataaataagggtataataat-gaaaaaaaaataataaatgctgcattggtattctaaagtgacaattattttgag 7495018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 11742665 - 11742708
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||    
T  11742665 taataaatgtttcattcgtattctaaagtgacaattattttgag 11742708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 16377748 - 16377787
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  16377748 ttaagttggatgaaattcaataaataaaagtataatagtg 16377787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37322467 - 37322363
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||  ||||||| |||         ||||||||  | ||| |||||| |||||||||||||    
T  37322467 agttagtggagtagttaagttagatgaaattcaataaataagggtataataatgg---aaaaaataataaatgctacataggtattctaaagtgacaatt 37322371  T
Q  101 attttgag 108  Q
    ||||||||    
T  37322370 attttgag 37322363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 1206777 - 1206815
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataata 51  Q
    |||||||||||||||||||||||||||| || |||||||    
T  1206777 agttaagttggatgaaattcaataaatatgagtataata 1206815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15359161 - 15359202
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  15359161 agttagtggagtagttaagttggatgaagttcaataaataag 15359202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18853275 - 18853316
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  18853275 agttagtagagtaattaatttggatgaaattcaataaataag 18853316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 31448779 - 31448808
Alignment:
Q  13 agttaagttggatgaaattcaataaataag 42  Q
    ||||||||||||||||||||||||||||||    
T  31448779 agttaagttggatgaaattcaataaataag 31448808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36794323 - 36794282
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  36794323 agttagtggagtagttaagttggatgaagttcaataaataag 36794282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17346436 - 17346476
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| |||||||||||| ||||||||||||||||    
T  17346436 agttagtggagtagttaagttggaagaaattcaataaataa 17346476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 49747000 - 49746895
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  ||||||| |||         |||||||| || ||||||||||||||||||||||||    
T  49747000 agttagttgagtagttaagttggatgaaattcaataaataagggtataataatgg-aaaaataataataaatgttgcattggtattgtaaagtgacaatt 49746902  T
Q  101 attttga 107  Q
    |||||||    
T  49746901 attttga 49746895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 35311305 - 35311412
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| | |||||||||||||||||||||||||||   ||||||| |||         |||||||| || ||||||||||||||||||||||||    
T  35311305 agttagtggagtaattaagttggatgaaattcaataaataaaggtataatattggaaaaaataataataaatgttgcattggtattgtaaagtgacaatt 35311404  T
Q  101 attttgag 108  Q
    ||||||||    
T  35311405 attttgag 35311412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 35380415 - 35380521
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| |||  |||||||||||||||||||||||||||||| ||||||| | ||        |||||||| || |||||||||| |||||||||||||    
T  35380415 agttagtggagtggttaagttggatgaaattcaataaataagagtataataat-ggaaaaaaaataataaatgttgcattggtattataaagtgacaatt 35380513  T
Q  101 attttgag 108  Q
    ||||||||    
T  35380514 attttgag 35380521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 51624825 - 51624720
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  ||| |||||||         |||||||| || ||||| ||||||||||||||||||    
T  51624825 agttagtggagtagttaagttggatgaaattcaataaataagggtatgatagtgg--aaaaaaataataaatgttacattgatattgtaaagtgacaatt 51624728  T
Q  101 attttgag 108  Q
    ||||||||    
T  51624727 attttgag 51624720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17237378 - 17237432
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  17237378 agttagtggagtagttaagttggatgaaattcaataaataagggtataatagtgg 17237432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32884840 - 32884786
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  32884840 agttagtggagtagttaagttggatggaattcaataaataaggatataatagtgg 32884786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 49176028 - 49176122
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||        |||||| | || |||||||||| |||||||||||||||||||||    
T  49176028 agttaagttggataaaattcaataaataagggtataatagtggg-aaaaaaataataattgttgcattggtattctaaagtgacaattattttgag 49176122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22130082 - 22129976
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| | |||||||||||||||||||||||||||   ||||||| |||         |||||||| || ||||||||||||||| ||||||||    
T  22130082 agttagtggagtaattaagttggatgaaattcaataaataaaggtataataatgg-aaaaaaaataataaatgttgcattggtattgtaaaatgacaatt 22129984  T
Q  101 attttgag 108  Q
    ||||||||    
T  22129983 attttgag 22129976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40122936 - 40123039
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||||||||||||| || |||||||||||||||||  || ||| |||||        |||||||| || ||||||||||||||||||| ||||    
T  40122936 agttagtggagcagttaagttcgacgaaattcaataaataagggtacaatggtggg-aaaaaaataataaatgttgcattggtattgtaaagtgataatt 40123034  T
Q  101 atttt 105  Q
    |||||    
T  40123035 atttt 40123039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6643754 - 6643796
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  6643754 agttaagttggatgaaattcaataaataagggtataatagtgg 6643796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21240786 - 21240836
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  21240786 agttagttgagtagttaagttggatgaaattcaataaataagggtataata 21240836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33790813 - 33790863
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  33790813 agttagtggagtagttaagttggatgaaattcaataaataagggtataata 33790863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 47464459 - 47464501
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  47464459 agttaagttggatgaaattcaataaataagggtataatagtgg 47464501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54506827 - 54506777
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||||||||||||    
T  54506827 agttagtggagtagttaagtttgatgaaattcaattaataagaatataata 54506777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 10672680 - 10672643
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataat 50  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  10672680 agttaagttggatgaaattcaataaataagagtataat 10672643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 10886320 - 10886283
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataat 50  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  10886320 agttaagttggatgaaattcaataaataagagtataat 10886283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 43237270 - 43237229
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  43237270 agttaagttggatgaaattcaataaataagtgtataatagtg 43237229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 53412135 - 53412094
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  53412135 agttaagttggatgaaattcaataaataaaagtataatagtg 53412094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 2942791 - 2942831
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  2942791 taataaatatttcattgatattgtaaaatgacaattatttt 2942831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 4972599 - 4972507
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||| ||| ||||||||||||||||||||  ||||||||||          |||||||| || ||||||||||||||||||||| ||||||||||    
T  4972599 agttatgttagatgaaattcaataaataagtgtataatagtg---aaaaaaataataaatgttacattggtattgtaaagtgacagttattttgag 4972507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 18741568 - 18741608
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagt 53  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  18741568 agttaagttggatgaaattcaataaataagtttataatagt 18741608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 25142473 - 25142509
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataa 49  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25142473 agttaagttggatgaaattcaataaataaggatataa 25142509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 53346798 - 53346746
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagt 53  Q
    ||||||| ||| ||||||||| |||||||||||||||||| || |||||||||    
T  53346798 agttagtggagtagttaagtttgatgaaattcaataaatatgagtataatagt 53346746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 2066768 - 2066725
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||  |||||||||||| |||||||||||||||||||||    
T  2066768 taataaatgcttcattggtattctaaagtgacaattattttgag 2066725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 38405196 - 38405290
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||   ||||||| | ||        |||||||| || ||||| |||| |||||||||||||||||||||    
T  38405196 agttaagttggatgaaattcaataaataaaggtataataat-ggaaaaaaagtaataaatgttgcattgctattctaaagtgacaattattttgag 38405290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 47773101 - 47773206
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||||||||| |||||||||||||  ||| ||| |||         ||||||||  | |||||||||| |||||||||||||    
T  47773101 agttagtggagtagttaagttggatgaagttcaataaataagggtattataatgg--aaaaaaataataaatgctgcattggtattctaaagtgacaatt 47773198  T
Q  101 attttgag 108  Q
    ||||||||    
T  47773199 attttgag 47773206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 49579273 - 49579304
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaat 45  Q
    ||||||||||||||||||||||||||||||||    
T  49579273 gttaagttggatgaaattcaataaataagaat 49579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 52859938 - 52859981
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| || |||||||||| |||||||||||||||||||||    
T  52859938 taataaatgttgcattggtattctaaagtgacaattattttgag 52859981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 6609788 - 6609750
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  6609788 agttaagttggatgaaactcaataaataagagtataata 6609750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 28911250 - 28911288
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  28911250 agttaagtttgatgaaattcaataaataagagtataata 28911288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34360694 - 34360640
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||| ||| |||||||||| || ||||||||||||||||  |||||||||||    
T  34360694 agttagtggagtagttaagttgaataaaattcaataaataagggtataatagtgg 34360640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36985825 - 36985771
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||  | ||||||||||||||||||||||||||||  |||||| ||||    
T  36985825 agttagtagaataattaagttggatgaaattcaataaataagggtataatggtgg 36985771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49428424 - 49428474
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| | ||||||||||||||||||||||||||||  |||||||    
T  49428424 agttagtggagtaattaagttggatgaaattcaataaataagggtataata 49428474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 108
Target Start/End: Original strand, 54921772 - 54921802
Alignment:
Q  78 attggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||||    
T  54921772 attggtattgtaaagtgacaattattttgag 54921802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16821413 - 16821466
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||| ||| | |||||||| |||||||||||||||||||  ||||||||||    
T  16821413 agttagtggagtatttaagttgaatgaaattcaataaataagggtataatagtg 16821466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10699504 - 10699540
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataat 50  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  10699504 gttaagttggatgaaatttaataaataagagtataat 10699540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10913274 - 10913310
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataat 50  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  10913274 gttaagttggatgaaatttaataaataagagtataat 10913310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 21698653 - 21698693
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattatttt 105  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  21698653 taataaatattgcattgatattttaaagtgacaattatttt 21698693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30682278 - 30682318
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||||||| |||||| ||| ||||||||||||||||||    
T  30682278 agttagtagagtagttaatttgaatgaaattcaataaataa 30682318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31370382 - 31370422
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| ||||||||||||||||| |||||||||||    
T  31370382 agttagtggagtagttaagttggatgaaaatcaataaataa 31370422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 35251924 - 35251888
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  35251924 ttaagttagatgaaattcaataaataaggatataata 35251888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 44301599 - 44301495
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattat 102  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||        |||||||| || ||||| |||| |||||||||||||||    
T  44301599 ttagtggagtagttaagttggatgaaattcaataaataagagtataatagt-ggaaaaatattaataaatgttgcattgatattataaagtgacaattat 44301501  T
Q  103 tttgag 108  Q
    ||||||    
T  44301500 tttgag 44301495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 43253939 - 43254045
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||| |||||||||||| ||||||||  |||||||||||         |||||||| || ||||||||||||||||||||||||    
T  43253939 agttagtggagtagttaagtgggatgaaattcattaaataagggtataatagtgg-aaaaaaactaataaatgttgcattggtattgtaaagtgacaatt 43254037  T
Q  101 attttgag 108  Q
    ||||||||    
T  43254038 attttgag 43254045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 10366737 - 10366830
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||        |||||||| || |||||||||| |||||||||||||||||||||    
T  10366737 agttaagttggatgaaattcaataaataagggtataataatggg--aaaaaataataaatgttgcattggtattctaaagtgacaattattttgag 10366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 36460506 - 36460597
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||  |||||||||||         ||||||||||| ||||| ||| ||||||||||||||||||||||    
T  36460506 ttaagttggatgaaattcaataaataagggtataatagtgg--aaacaaataataaatattgcattgatatcgtaaagtgacaattattttgag 36460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36476623 - 36476518
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||||  ||||||| | |         ||||||||  | |||||||||| |||||||||||||    
T  36476623 agttagtagagtagttaagtttgatgaaattcaataaataagggtataataatag--aaaaaagtaataaatgctgcattggtattctaaagtgacaatt 36476526  T
Q  101 attttgag 108  Q
    ||||||||    
T  36476525 attttgag 36476518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12904903 - 12904849
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||| ||| | ||||||||||||||||||||||||||||  |||||||||||    
T  12904903 agttagtggagtaattaagttggatgaaattcaataaataagggtataatagtgg 12904849  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 24703689 - 24703647
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  24703689 agttaagttggatgaaattcaataaataaagatataatagtgg 24703647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 38137534 - 38137626
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttga 107  Q
    |||||| || |||||||||||||||||||  ||||||||||||         ||||||||||| |||| |||||| |||||||||||||||||||    
T  38137534 agttaaattcgatgaaattcaataaataaagatataatagtgg--aaaataataataaatattgcattagtattgcaaagtgacaattattttga 38137626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 11632108 - 11632067
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  11632108 agttaagttggatgaaattcaataaataaaagtataatagtg 11632067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 30711104 - 30711059
Alignment:
Q  9 gagcagttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  30711104 gagcaattaagttagatgaaattcaataaataagattataatagtg 30711059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 3313279 - 3313243
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3313279 ttaagttggatgaaattcaataaataagattataata 3313243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 8679144 - 8679184
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  8679144 ttaagttggatgaaattcaataaataagggtataatagtgg 8679184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37497531 - 37497491
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  37497531 agttagtggagtagttaagttggatgaaattcaataaataa 37497491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39043833 - 39043932
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||||||| |||||||||||||||||||  ||||||| ||          |||||||| || |||||||||| |||||||||||||    
T  39043833 agttagtggagtagttaagttgaatgaaattcaataaataagggtataataatg----aaaaaataataaatgttgcattggtattctaaagtgacaatt 39043928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 108
Target Start/End: Original strand, 37773116 - 37773147
Alignment:
Q  77 cattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||||    
T  37773116 cattggtattgtaaagtgacaattattttgag 37773147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 38795317 - 38795278
Alignment:
Q  69 aaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  38795317 aaatattgcattggtattctaaagtgacaattattttgag 38795278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1778682 - 1778632
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| || |||||||||||||||||||||||||||  |||||||    
T  1778682 agttagtggagtagataagttggatgaaattcaataaataagggtataata 1778632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 24569246 - 24569276
Alignment:
Q  77 cattggtattgtaaagtgacaattattttga 107  Q
    |||||||||||||||||||||||||||||||    
T  24569246 cattggtattgtaaagtgacaattattttga 24569276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37695742 - 37695792
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||  |||||||    
T  37695742 agttagtggagtagttaagttagatgaaattcaataaataagggtataata 37695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 11905848 - 11905811
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11905848 gttaagttggatgaaattcaataaataaagatataata 11905811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 19823038 - 19823009
Alignment:
Q  13 agttaagttggatgaaattcaataaataag 42  Q
    ||||||||||||||||||||||||||||||    
T  19823038 agttaagttggatgaaattcaataaataag 19823009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23004458 - 23004499
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  23004458 agttagtggagtagttaagttgtatgaaattcaataaataag 23004499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30190736 - 30190777
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||    
T  30190736 agttagtggagtagttaagttggatgaaattcaattaataag 30190777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 33491501 - 33491542
Alignment:
Q  67 ataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||| | |||| |||||||||||||||||||||||||||    
T  33491501 ataaatactacattagtattgtaaagtgacaattattttgag 33491542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45710889 - 45710848
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  45710889 agttagtggagtagttaagttggatgaagttcaataaataag 45710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 53560256 - 53560215
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||||||| |||||||||| ||||| |||||||||||||    
T  53560256 agttagtagagtagttaagttgaatgaagttcaataaataag 53560215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 3901239 - 3901275
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||||||||||||||||||||||  |||||||    
T  3901239 ttaagttggatgaaattcaataaataagggtataata 3901275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 5323015 - 5323063
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    |||||| || ||||||||| ||||||||||||||||||||  |||||||    
T  5323015 ttagtaaagtagttaagtttgatgaaattcaataaataagggtataata 5323063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 28690870 - 28690898
Alignment:
Q  13 agttaagttggatgaaattcaataaataa 41  Q
    |||||||||||||||||||||||||||||    
T  28690870 agttaagttggatgaaattcaataaataa 28690898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29024041 - 29024081
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| | |||||||||||||||||||||||||||    
T  29024041 agttagtggagtaattaagttggatgaaattcaataaataa 29024081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41351640 - 41351680
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| |||||||||| ||||||||||||||||||    
T  41351640 agttagtggagtagttaagttgaatgaaattcaataaataa 41351680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8698348 - 8698242
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| |||  |||||||||||||||||||||||||||||  ||||||||| ||        ||||||||| | ||||| ||||||||||||||||||    
T  8698348 agttagtggagtggttaagttggatgaaattcaataaataagggtataatagt-ggaaaaaaaataataaatactacattgatattgtaaagtgacaatt 8698250  T
Q  101 attttgag 108  Q
    ||||||||    
T  8698249 attttgag 8698242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 40530298 - 40530403
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| |||  |||||||||||||||||| ||||||||||  ||||||||||||        ||||||||  | ||||||||||||||||||||||||    
T  40530298 agttagtggagtggttaagttggatgaaattaaataaataagggtataatagtggg-aaataaataataaatgctgcattggtattgtaaagtgacaatt 40530396  T
Q  101 attttga 107  Q
    |||||||    
T  40530397 attttga 40530403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 6315863 - 6315956
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||  ||||||| |||         |||||||| || |||||||||| |||||||||||||||||||||    
T  6315863 agttaagttggatgaaattcaataaataagggtataataatgg--aaaataataataaatgttgcattggtattctaaagtgacaattattttgag 6315956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 19929973 - 19929882
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttg 106  Q
    ||||||||||||||||||||||||||||||  ||||||| |||         |||||||| || |||||||||| |||||||||||||||||||    
T  19929973 agttaagttggatgaaattcaataaataagggtataataatgg--aaaataataataaatgttgcattggtattctaaagtgacaattattttg 19929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 29570419 - 29570378
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  29570419 agttaagttggatgaaattcaataaataagagtataatagtg 29570378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 4818576 - 4818484
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||| ||||||||||||||||||||  ||||||||||||        ||||||||  | |||||||||| |||||||||||||||||||||    
T  4818576 ttaagttagatgaaattcaataaataagggtataatagtggg-aaaaaaataataaatgctacattggtattataaagtgacaattattttgag 4818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6615954 - 6616059
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| |||  ||||||||||||||| |||||||||||||  |||||||||||         |||||||| || ||| ||||||||||||||||||||    
T  6615954 agttagtggagtggttaagttggatgaa-ttcaataaataagggtataatagtgg-aaaaaaaataataaatgttgcataggtattgtaaagtgacaatt 6616051  T
Q  101 attttgag 108  Q
    ||||||||    
T  6616052 attttgag 6616059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9515775 - 9515668
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg-gnnnnnnnntaataaatatttcattggtattgtaaagtgacaat 99  Q
    ||||||| ||| |||||||||| |||||||||| ||||||||| |||||||||||          ||||||||  | |||| ||||||||||||||||||    
T  9515775 agttagtggagtagttaagttgaatgaaattcattaaataagagtataatagtggaaaataataataataaatgatgcattagtattgtaaagtgacaat 9515676  T
Q  100 tattttga 107  Q
    ||||||||    
T  9515675 tattttga 9515668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41496119 - 41496014
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| |||||| ||||||||||| ||||||||||   |||||||||||         |||||||| || |||| |||||||||||||||||||    
T  41496119 agttagtggagtagttaaattggatgaaatgcaataaataaaggtataatagtgg--aaaagaataataaatgttgcattagtattgtaaagtgacaatt 41496022  T
Q  101 attttgag 108  Q
    ||||||||    
T  41496021 attttgag 41496014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 2232145 - 2232195
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataatagt 53  Q
    ||||| ||| ||||||||||||||||||||||||||||||  |||||||||    
T  2232145 ttagtggagtagttaagttggatgaaattcaataaataagggtataatagt 2232195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6753732 - 6753836
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||  ||||||| |||         |||||||| || |||||||||| |||||||| ||||    
T  6753732 agttagtggagtagttaagttggatgaaatttaataaataagggtataataatgg--aaaaagataataaatgttgcattggtattctaaagtgataatt 6753829  T
Q  101 attttga 107  Q
    |||||||    
T  6753830 attttga 6753836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7828000 - 7828050
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||||||||||||| |||||||||| ||||||||    
T  7828000 agttagtggagtagttaagttggatgaaatttaataaataaggatataata 7828050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27542834 - 27542784
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||| |||||||    
T  27542834 agttagtggagtagttaagttggataaaattcaataaataagagtataata 27542784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 32439899 - 32439857
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  32439899 agttaagttggatgaaattcaataaatagggatataatagtgg 32439857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6754068 - 6754027
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataag 42  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  6754068 agttagtggagtagttaagttggatgaaattcaataaataag 6754027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 42803707 - 42803744
Alignment:
Q  14 gttaagttggatgaaattcaataaataagaatataata 51  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42803707 gttaagttggatgaaattcaataaataagagtataata 42803744  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 41492287 - 41492248
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatag 52  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  41492287 agttaagttggatgaaattcaataaataaagatataatag 41492248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37101279 - 37101329
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||||||| | |||| || ||||||||||||||||||| |||||||||    
T  37101279 agttagtagagtaattaaatttgatgaaattcaataaataaaaatataata 37101329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40899957 - 40899907
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataata 51  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||  |||||||    
T  40899957 agttagtggagtagttaagttagatgaaattcaataaataagggtataata 40899907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 30512772 - 30512809
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataat 50  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  30512772 agttaagttggatgaaatttaataaataaggatataat 30512809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 30553112 - 30553149
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataat 50  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  30553112 agttaagttggatgaaatttaataaataaggatataat 30553149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 41480178 - 41480137
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    |||||||||||||||||||||||||||||   ||||||||||    
T  41480178 agttaagttggatgaaattcaataaataaaggtataatagtg 41480137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4441060 - 4441020
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| |||||| ||||||||||||||||||||||    
T  4441060 agttagtggagtagttaaattggatgaaattcaataaataa 4441020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21060669 - 21060629
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| ||||||||||||| |||||||||||||||    
T  21060669 agttagtggagtagttaagttggataaaattcaataaataa 21060629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39325902 - 39325862
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| ||||||||||||| |||||||||||||||    
T  39325902 agttagtggagtagttaagttggattaaattcaataaataa 39325862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 41478812 - 41478784
Alignment:
Q  13 agttaagttggatgaaattcaataaataa 41  Q
    |||||||||||||||||||||||||||||    
T  41478812 agttaagttggatgaaattcaataaataa 41478784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 21425644 - 21425738
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttga 107  Q
    |||||||||||||||||||||||||||||| ||||||| ||||         |||||||| || ||||| ||||||||||| |||||||||||||    
T  21425644 agttaagttggatgaaattcaataaataaggatataatggtggaaaaaataataataaatgttgcattgatattgtaaagtaacaattattttga 21425738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 181595 - 181491
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||  |||||||||  |        |||||||| || |||| |||||||||||||||||||    
T  181595 agttagtggagtagttaagttggatgaaattcaataaataagggtataatagt--gaaaaataataataaatgttgcatt-gtattgtaaagtgacaatt 181499  T
Q  101 attttgag 108  Q
    ||||||||    
T  181498 attttgag 181491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 29363333 - 29363238
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||||||||||||||| ||||||| |||         ||||||||  | |||||||||| | |||||||||||||||||||    
T  29363333 agttaagttggatgaaattcaataaataagagtataataatggaaaaaataataataaatgctgcattggtattctgaagtgacaattattttgag 29363238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 21010210 - 21010105
Alignment:
Q  3 ttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattat 102  Q
    ||||| ||| ||||||||||||||||||||||||||||| | ||||||| |||         | ||||||  | |||||||||| |||||||||||||||    
T  21010210 ttagtggagtagttaagttggatgaaattcaataaataacagtataataatggaaaaaaaaattataaatgctgcattggtattataaagtgacaattat 21010111  T
Q  103 tttgag 108  Q
    ||||||    
T  21010110 tttgag 21010105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 13087555 - 13087519
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataata 51  Q
    |||||||||||||||||||||||||||||||||||||    
T  13087555 ttaagttggatgaaattcaataaataagaatataata 13087519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34657637 - 34657745
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg-gnnnnnnnntaataaatatttcattggtattgtaaagtgacaat 99  Q
    ||||||| ||| |||||||||||||||||||||||||||||   |||||||||||          ||||||||  | ||| |||||||||||||||||||    
T  34657637 agttagtggagtagttaagttggatgaaattcaataaataaatgtataatagtggaaaaaaaatataataaattctgcataggtattgtaaagtgacaat 34657736  T
Q  100 tattttgag 108  Q
    |||||||||    
T  34657737 tattttgag 34657745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 27367524 - 27367607
Alignment:
Q  25 tgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||  |||||||||||         |||||||| || ||||||||||||||||||||||||||| ||||    
T  27367524 tgaaattcaataaataagggtataatagtggaaaaaaaactaataaatgttacattggtattgtaaagtgacaattattctgag 27367607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 27457871 - 27457954
Alignment:
Q  25 tgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    ||||||||||||||||||  |||||||||||         |||||||| || ||||||||||||||||||||||||||| ||||    
T  27457871 tgaaattcaataaataagggtataatagtggaaaaaaaactaataaatgttacattggtattgtaaagtgacaattattctgag 27457954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 31283488 - 31283531
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtggg 56  Q
    |||||||||||||||||||||||||||||| |||||||| ||||    
T  31283488 agttaagttggatgaaattcaataaataaggatataataatggg 31283531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11656021 - 11656127
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaatt 100  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||  ||||||| ||||        ||||||||  | ||||| |||| |||||||||||||    
T  11656021 agttagtggagtagtaaagttggatgaaattcaataaataagggtataataatggg-aaaaaaataataaatgctgcattgatattctaaagtgacaatt 11656119  T
Q  101 attttgag 108  Q
    ||||||||    
T  11656120 attttgag 11656127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 3720328 - 3720371
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtggg 56  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||    
T  3720328 agttaagttgaatgaaattcagtaaataagagtataatagtggg 3720371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 21478232 - 21478275
Alignment:
Q  65 taataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||| ||  |||||||||||||||||||||||||||||||    
T  21478232 taataaatgttgtattggtattgtaaagtgacaattattttgag 21478275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 10923475 - 10923505
Alignment:
Q  23 gatgaaattcaataaataagaatataatagt 53  Q
    |||||||||||||||||||||||||||||||    
T  10923475 gatgaaattcaataaataagaatataatagt 10923505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 15058142 - 15058104
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagt 53  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  15058142 ttaagttggatgaaattcaataaataagggtataatagt 15058104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24983524 - 24983578
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||  |||| ||||||    
T  24983524 agttagtggagtagttaagttgggtgaaattcaataaataagggtatattagtgg 24983578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 28106016 - 28106058
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgg 55  Q
    |||||||||| ||||||||||||||||||  ||||||||||||    
T  28106016 agttaagttgaatgaaattcaataaataatgatataatagtgg 28106058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 23142643 - 23142602
Alignment:
Q  67 ataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||| || ||||| ||||||||||||||||||||||||||    
T  23142643 ataaatgttgcattgatattgtaaagtgacaattattttgag 23142602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 31894297 - 31894338
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtg 54  Q
    ||||||||||||||||||| ||||||||||  ||||||||||    
T  31894297 agttaagttggatgaaatttaataaataagggtataatagtg 31894338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15046162 - 15046111
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataagaatataatagt 53  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||  |||||||||    
T  15046162 agttagtggagtagtta-gttggatgaaattcaataaataagggtataatagt 15046111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 34107 - 34199
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||||||||||||||||||||||   |||||||||||         ||||||||  | ||||| ||||||||||||||||||||||||||    
T  34107 agttaagttggatgaaattcaataaataatggtataatagtgg---aaaaaataataaatgatgcattgatattgtaaagtgacaattattttgag 34199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5429 - 5389
Alignment:
Q  1 agttagtagagcagttaagttggatgaaattcaataaataa 41  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  5429 agttagtggagtagttaagttggatgaaattcaataaataa 5389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 252892 - 252984
Alignment:
Q  13 agttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||||||||| |||||||||||||||||||| ||||||| ||          |||||||| || |||||||||| ||||||||||||| |||||||    
T  252892 agttaagttgaatgaaattcaataaataagagtataataatg---aaaaaaataataaatgttgcattggtattataaagtgacaatttttttgag 252984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 16128 - 16089
Alignment:
Q  10 agcagttaagttggatgaaattcaataaataagaatataa 49  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  16128 agcagttaagatggatgaaattcaataaataaggatataa 16089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 774 - 864
Alignment:
Q  15 ttaagttggatgaaattcaataaataagaatataatagtgggnnnnnnnntaataaatatttcattggtattgtaaagtgacaattattttgag 108  Q
    |||| |||||||||||||||||||||||  |||||||||||         || | ||| || || |||||||||||||||||||||||||||||    
T  774 ttaaattggatgaaattcaataaataagggtataatagtgg---aaaaaatattcaatgttgcaatggtattgtaaagtgacaattattttgag 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 76328 - 76279
Alignment:
Q  4 tagtagagcagttaagttggatgaaattcaataaataagaatataatagt 53  Q
    |||| ||| ||||||||| ||||||||||||||||||||  |||||||||    
T  76328 tagtggagtagttaagttagatgaaattcaataaataagggtataatagt 76279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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