View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_high_88 (Length: 334)

Name: NF1343_high_88
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_high_88
NF1343_high_88
[»] chr2 (30 HSPs)
chr2 (30-334)||(31764717-31765022)
chr2 (284-334)||(13499832-13499882)
chr2 (280-334)||(16707225-16707279)
chr2 (288-334)||(19366520-19366566)
chr2 (280-334)||(14370163-14370217)
chr2 (285-334)||(1598919-1598968)
chr2 (293-334)||(2112401-2112442)
chr2 (293-334)||(14122460-14122501)
chr2 (293-334)||(33940299-33940340)
chr2 (293-334)||(41974477-41974518)
chr2 (286-334)||(18549287-18549335)
chr2 (288-334)||(644752-644798)
chr2 (284-334)||(2112639-2112689)
chr2 (288-334)||(5038381-5038427)
chr2 (288-334)||(29419551-29419597)
chr2 (281-331)||(36387045-36387095)
chr2 (293-334)||(8846732-8846773)
chr2 (285-334)||(10300341-10300390)
chr2 (293-334)||(11554269-11554310)
chr2 (293-334)||(11723391-11723432)
chr2 (293-334)||(16065430-16065471)
chr2 (293-334)||(16971123-16971164)
chr2 (293-334)||(18479512-18479553)
chr2 (293-334)||(18677061-18677102)
chr2 (293-334)||(34423445-34423486)
chr2 (293-334)||(35428840-35428881)
chr2 (293-334)||(36065949-36065990)
chr2 (293-334)||(38556063-38556104)
chr2 (282-334)||(128672-128723)
chr2 (288-332)||(22303800-22303844)
[»] scaffold0045 (1 HSPs)
scaffold0045 (285-334)||(22212-22261)
[»] chr8 (33 HSPs)
chr8 (293-334)||(32723940-32723981)
chr8 (293-334)||(36129065-36129106)
chr8 (282-334)||(34872675-34872727)
chr8 (284-334)||(27519443-27519493)
chr8 (289-334)||(11140651-11140696)
chr8 (293-334)||(23678289-23678330)
chr8 (274-334)||(13155657-13155717)
chr8 (279-334)||(15890054-15890109)
chr8 (288-334)||(8082507-8082553)
chr8 (280-334)||(36683355-36683409)
chr8 (284-334)||(41738683-41738733)
chr8 (284-334)||(42129346-42129396)
chr8 (293-334)||(2060756-2060797)
chr8 (293-334)||(4017743-4017784)
chr8 (293-334)||(6472082-6472123)
chr8 (293-334)||(7057429-7057470)
chr8 (293-334)||(7288007-7288048)
chr8 (293-334)||(10167508-10167549)
chr8 (293-334)||(10579270-10579311)
chr8 (285-334)||(10675355-10675404)
chr8 (293-334)||(15105062-15105103)
chr8 (293-334)||(16355843-16355884)
chr8 (293-334)||(25897896-25897937)
chr8 (293-334)||(26097664-26097705)
chr8 (293-334)||(32974044-32974085)
chr8 (293-334)||(38075216-38075257)
chr8 (287-332)||(42217145-42217190)
chr8 (293-334)||(43165789-43165830)
chr8 (293-334)||(44163968-44164009)
chr8 (285-334)||(44904633-44904682)
chr8 (285-334)||(44947846-44947895)
chr8 (278-322)||(42129127-42129171)
chr8 (290-334)||(43641817-43641861)
[»] chr5 (46 HSPs)
chr5 (288-334)||(5118408-5118454)
chr5 (284-334)||(30187716-30187766)
chr5 (293-334)||(5905079-5905120)
chr5 (293-334)||(7949148-7949189)
chr5 (285-334)||(18279316-18279365)
chr5 (293-334)||(29785615-29785656)
chr5 (293-334)||(31163365-31163406)
chr5 (293-334)||(35514751-35514792)
chr5 (285-334)||(37109573-37109622)
chr5 (286-334)||(34578572-34578620)
chr5 (286-334)||(41621371-41621419)
chr5 (286-334)||(42396795-42396843)
chr5 (287-334)||(10862421-10862468)
chr5 (283-334)||(42992260-42992311)
chr5 (288-334)||(7200869-7200915)
chr5 (288-334)||(7948951-7948997)
chr5 (288-334)||(27279749-27279795)
chr5 (288-334)||(39084412-39084458)
chr5 (288-334)||(39084654-39084700)
chr5 (293-334)||(857674-857715)
chr5 (285-334)||(1950139-1950188)
chr5 (293-334)||(7401404-7401445)
chr5 (293-334)||(7730802-7730843)
chr5 (293-334)||(10862184-10862225)
chr5 (293-334)||(14311132-14311173)
chr5 (293-334)||(14347279-14347320)
chr5 (293-334)||(18279079-18279120)
chr5 (293-334)||(19089257-19089298)
chr5 (293-334)||(19617913-19617954)
chr5 (293-334)||(21052306-21052347)
chr5 (293-334)||(21052543-21052584)
chr5 (293-334)||(22225319-22225360)
chr5 (297-334)||(24802068-24802105)
chr5 (293-334)||(25353538-25353579)
chr5 (289-334)||(25353775-25353820)
chr5 (293-334)||(25947702-25947743)
chr5 (293-334)||(27279960-27280001)
chr5 (293-334)||(28770577-28770618)
chr5 (293-334)||(28770813-28770854)
chr5 (293-334)||(30239234-30239275)
chr5 (293-334)||(33866777-33866818)
chr5 (293-334)||(39985972-39986013)
chr5 (286-334)||(9129746-9129794)
chr5 (294-334)||(30239471-30239511)
chr5 (294-334)||(33619856-33619896)
chr5 (286-334)||(41907460-41907508)
[»] chr4 (31 HSPs)
chr4 (284-334)||(1842657-1842707)
chr4 (293-334)||(3060587-3060628)
chr4 (285-334)||(7603822-7603871)
chr4 (285-334)||(53849844-53849893)
chr4 (286-334)||(8412296-8412344)
chr4 (282-334)||(32806971-32807023)
chr4 (294-334)||(35023583-35023623)
chr4 (294-334)||(35804400-35804440)
chr4 (287-334)||(22519515-22519562)
chr4 (279-334)||(23257197-23257252)
chr4 (279-334)||(23275075-23275130)
chr4 (280-334)||(8459334-8459388)
chr4 (284-334)||(19320266-19320316)
chr4 (288-334)||(29520702-29520748)
chr4 (288-334)||(49488014-49488060)
chr4 (288-334)||(51948072-51948118)
chr4 (293-334)||(1842420-1842461)
chr4 (293-334)||(2251564-2251605)
chr4 (293-334)||(6452241-6452282)
chr4 (293-334)||(8562652-8562693)
chr4 (293-334)||(11338941-11338982)
chr4 (293-334)||(11339178-11339219)
chr4 (293-334)||(12759833-12759874)
chr4 (293-334)||(26441395-26441436)
chr4 (293-334)||(27704508-27704549)
chr4 (293-334)||(35023347-35023388)
chr4 (293-334)||(44595973-44596014)
chr4 (281-334)||(46281460-46281513)
chr4 (293-334)||(48148973-48149013)
chr4 (293-334)||(50309649-50309690)
chr4 (293-334)||(52224326-52224367)
[»] chr3 (34 HSPs)
chr3 (288-334)||(45647792-45647838)
chr3 (293-334)||(11691589-11691630)
chr3 (293-334)||(40127935-40127976)
chr3 (293-334)||(46799548-46799589)
chr3 (282-334)||(35119300-35119352)
chr3 (286-334)||(36711053-36711101)
chr3 (274-334)||(55453853-55453913)
chr3 (283-334)||(20222091-20222142)
chr3 (287-334)||(40593850-40593897)
chr3 (288-334)||(2008673-2008719)
chr3 (288-334)||(42928643-42928689)
chr3 (288-334)||(49422293-49422339)
chr3 (293-331)||(54767637-54767675)
chr3 (284-334)||(55453607-55453657)
chr3 (293-334)||(9557566-9557607)
chr3 (293-334)||(11691826-11691867)
chr3 (293-334)||(11899714-11899755)
chr3 (293-334)||(11936015-11936056)
chr3 (293-334)||(15043490-15043531)
chr3 (293-334)||(21212073-21212114)
chr3 (293-334)||(24681444-24681485)
chr3 (293-334)||(29359032-29359073)
chr3 (281-334)||(36710805-36710857)
chr3 (293-334)||(42489614-42489655)
chr3 (293-334)||(42541506-42541547)
chr3 (281-334)||(43563529-43563582)
chr3 (293-334)||(44035593-44035634)
chr3 (293-334)||(44035830-44035871)
chr3 (293-334)||(45954155-45954196)
chr3 (293-334)||(46175841-46175882)
chr3 (293-334)||(46289643-46289684)
chr3 (293-334)||(50001341-50001382)
chr3 (286-334)||(15043728-15043776)
chr3 (294-334)||(45692913-45692953)
[»] chr1 (24 HSPs)
chr1 (280-334)||(49804139-49804193)
chr1 (293-334)||(49804357-49804398)
chr1 (284-332)||(51353333-51353381)
chr1 (279-334)||(34340811-34340866)
chr1 (280-334)||(25137224-25137278)
chr1 (288-334)||(35937672-35937718)
chr1 (288-334)||(52752198-52752244)
chr1 (293-334)||(3617136-3617177)
chr1 (293-334)||(5333494-5333535)
chr1 (293-334)||(5562878-5562919)
chr1 (293-334)||(6056800-6056841)
chr1 (293-334)||(6057136-6057177)
chr1 (285-334)||(6057341-6057390)
chr1 (293-334)||(6764020-6764061)
chr1 (293-334)||(7065212-7065253)
chr1 (293-334)||(14421736-14421777)
chr1 (285-334)||(28250380-28250429)
chr1 (293-334)||(42928858-42928899)
chr1 (293-334)||(48795424-48795465)
chr1 (293-334)||(51053516-51053557)
chr1 (285-334)||(51549852-51549900)
chr1 (283-319)||(44806575-44806611)
chr1 (286-334)||(48623694-48623742)
chr1 (286-334)||(51345659-51345707)
[»] scaffold0115 (1 HSPs)
scaffold0115 (281-334)||(43090-43143)
[»] chr7 (30 HSPs)
chr7 (293-334)||(11831989-11832030)
chr7 (293-334)||(22745047-22745088)
chr7 (293-334)||(37331307-37331348)
chr7 (293-334)||(44887546-44887587)
chr7 (286-334)||(21047554-21047602)
chr7 (286-334)||(37220161-37220209)
chr7 (288-331)||(19578999-19579042)
chr7 (280-334)||(46789769-46789823)
chr7 (293-334)||(2285598-2285639)
chr7 (293-334)||(8761368-8761409)
chr7 (293-334)||(19532660-19532701)
chr7 (285-334)||(19837433-19837482)
chr7 (293-334)||(21994013-21994054)
chr7 (293-334)||(26626491-26626532)
chr7 (289-334)||(30071697-30071742)
chr7 (293-334)||(30085335-30085376)
chr7 (279-328)||(31521139-31521188)
chr7 (293-334)||(33253820-33253861)
chr7 (293-334)||(37712415-37712456)
chr7 (285-334)||(38444645-38444694)
chr7 (293-334)||(38730283-38730324)
chr7 (293-334)||(40081662-40081703)
chr7 (293-334)||(40619917-40619958)
chr7 (293-334)||(41492573-41492614)
chr7 (293-334)||(43977647-43977688)
chr7 (285-334)||(44157925-44157974)
chr7 (293-334)||(45803214-45803255)
chr7 (293-334)||(46789562-46789603)
chr7 (286-334)||(38730460-38730508)
chr7 (298-334)||(44719536-44719572)
[»] chr6 (31 HSPs)
chr6 (285-334)||(8979079-8979128)
chr6 (293-334)||(18030886-18030927)
chr6 (293-334)||(18328084-18328125)
chr6 (293-334)||(20026043-20026084)
chr6 (293-334)||(24045950-24045991)
chr6 (293-334)||(32462122-32462163)
chr6 (293-334)||(32462359-32462400)
chr6 (294-334)||(8979323-8979363)
chr6 (286-334)||(32647219-32647267)
chr6 (293-332)||(3992583-3992622)
chr6 (288-331)||(12757479-12757522)
chr6 (283-334)||(25059344-25059395)
chr6 (284-334)||(6366498-6366548)
chr6 (288-334)||(12145314-12145360)
chr6 (284-334)||(15837391-15837441)
chr6 (288-334)||(19779541-19779587)
chr6 (288-334)||(29681840-29681886)
chr6 (284-334)||(30579269-30579319)
chr6 (293-334)||(4062610-4062651)
chr6 (293-334)||(7620950-7620991)
chr6 (293-334)||(14864005-14864046)
chr6 (293-334)||(16539259-16539300)
chr6 (293-334)||(18030649-18030690)
chr6 (293-334)||(18501723-18501764)
chr6 (293-334)||(22787202-22787243)
chr6 (293-334)||(24796963-24797004)
chr6 (293-334)||(25059560-25059601)
chr6 (293-334)||(31052309-31052350)
chr6 (293-334)||(32646982-32647023)
chr6 (286-334)||(9242373-9242421)
chr6 (294-334)||(22787439-22787479)
[»] scaffold0991 (1 HSPs)
scaffold0991 (288-334)||(660-706)
[»] scaffold0175 (1 HSPs)
scaffold0175 (288-334)||(26443-26489)
[»] scaffold0029 (2 HSPs)
scaffold0029 (280-334)||(17599-17653)
scaffold0029 (280-334)||(42612-42666)
[»] scaffold0283 (1 HSPs)
scaffold0283 (285-334)||(3825-3874)
[»] scaffold0040 (1 HSPs)
scaffold0040 (293-334)||(49037-49078)
[»] scaffold0032 (1 HSPs)
scaffold0032 (293-334)||(37617-37658)
[»] scaffold0009 (1 HSPs)
scaffold0009 (293-334)||(262637-262678)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 334
Target Start/End: Original strand, 31764717 - 31765022
Alignment:
Q  30 taaagaaactaattgaccaattttacattacaaattatatataattaattgattgatgggcctattgtctcaacactccttaaagcacaatgaaactaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31764717 taaagaaactaattgaccaattttacattacaaattatatataattaattgattgatgggcctattgtctcaacactccttaaagcacaatgaaactaaa 31764816  T
Q  130 caatacacaatcactttgtcaaatcatggtaaactatatagaatggttaccttgttttctttcttgtaagtggtgttcaatcaccattcaaagatgtgca 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31764817 caatacacaatcactttgtcaaataatggtaaactatatagaatggttacattgttttctttcttgtaagtggtgctcaatcaccattcaaagatgtgca 31764916  T
Q  230 tta-nnnnnnnnctggtataaaataaggaatattctatttacacatttcatataaattttaggcttaattaagtttctagttcctataaatatttacagt 328  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||| |||||    
T  31764917 ttattttttattctggtataaaataaggaatattctatttacacatttcatataaattttaggcttaattacgtttttagttgctgtaaatattcacagt 31765016  T
Q  329 tttgtt 334  Q
    ||||||    
T  31765017 tttgtt 31765022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 13499832 - 13499882
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  13499832 attttagggttaattaagtttttagttcctataaatattcacagttttgtt 13499882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 16707279 - 16707225
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  16707279 ataatttttagggttaattaagtttttagtccctataaatatttacagttttgtt 16707225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 19366566 - 19366520
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  19366566 taggattaattaagtttttagttcctataaatatttacagttttgtt 19366520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 14370217 - 14370163
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  14370217 ataaattataggattaattaagtttttagtccctataaatattcacagttttgtt 14370163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 1598968 - 1598919
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  1598968 ttttagggttaattaagtttttagtccctataaatattcacagttttgtt 1598919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 2112401 - 2112442
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  2112401 ttaattaagtttttagtccctataaatatttacagttttgtt 2112442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 14122501 - 14122460
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  14122501 ttaattaagtttttagttcctataaatattcacagttttgtt 14122460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 33940299 - 33940340
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  33940299 ttaattaagtttttagtccctataaatatttacagttttgtt 33940340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 41974518 - 41974477
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  41974518 ttaattaagtttttagttcctataaatattcacagttttgtt 41974477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 18549287 - 18549335
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||||||||||||||| | ||||||||||    
T  18549287 tttagggttaattaagtttttagttcctataaatatctgcagttttgtt 18549335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 644752 - 644798
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  644752 tagggttaattaagtttttagtccctataaatattcacagttttgtt 644798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 2112689 - 2112639
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| |||| | |||||||||| |||||||||||    
T  2112689 attttagggttaattaagtttttagtccttataaatattcacagttttgtt 2112639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 5038427 - 5038381
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  5038427 tagggttaattaagtttttagtccctataaatattcacagttttgtt 5038381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 29419597 - 29419551
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  29419597 taggattaattaagtttttagtccctataaatattcacagttttgtt 29419551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 36387095 - 36387045
Alignment:
Q  281 taaattttaggcttaattaagtttctagttcctataaatatttacagtttt 331  Q
    |||||| |||| |||||||||||| |||| ||||||||||||| |||||||    
T  36387095 taaattatagggttaattaagtttttagtccctataaatattttcagtttt 36387045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 8846732 - 8846773
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  8846732 ttaattaagtttttagtccctataaatattcacagttttgtt 8846773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 10300341 - 10300390
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| || ||||||||| |||| |||||||||||| |||||||||||    
T  10300341 ttttagggttgattaagtttttagtccctataaatattcacagttttgtt 10300390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11554269 - 11554310
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  11554269 ttaattaagtttttagtccctataaatattcacagttttgtt 11554310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11723391 - 11723432
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  11723391 ttaattaagtttttagtccctataaatattcacagttttgtt 11723432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 16065430 - 16065471
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  16065430 ttaattaagtttttagtgcctataaatattcacagttttgtt 16065471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 16971164 - 16971123
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  16971164 ttaattaagtttttagtgcctataaatattcacagttttgtt 16971123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 18479512 - 18479553
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  18479512 ttaattaagtttttagtccctataaatattcacagttttgtt 18479553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 18677061 - 18677102
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  18677061 ttaattaagtttttagtccctataaatattcacagttttgtt 18677102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 34423445 - 34423486
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  34423445 ttaattaagtttttagtccctataaatattcacagttttgtt 34423486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 35428840 - 35428881
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  35428840 ttaattaagtttttagtccctataaatattcacagttttgtt 35428881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 36065990 - 36065949
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  36065990 ttaattaagtttttagtccctataaatattcacagttttgtt 36065949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 38556063 - 38556104
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  38556063 ttaattaagtttttagtccctataaatattcacagttttgtt 38556104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 128672 - 128723
Alignment:
Q  282 aaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  128672 aaattataggattaattaagtttttagt-cctataaatattcacagttttgtt 128723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 22303800 - 22303844
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttg 332  Q
    |||| |||||||||||| | |||||||||||||||| ||||||||    
T  22303800 tagggttaattaagtttttggttcctataaatatttgcagttttg 22303844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 22261 - 22212
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  22261 ttttagggttaattaagtttttagtccctataaatatttacagttttgtt 22212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 32723981 - 32723940
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  32723981 ttaattaagtttttagttcctataaatatttacagttttgtt 32723940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 36129106 - 36129065
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  36129106 ttaattaagtttctagtccctataaatatttacagttttgtt 36129065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 34872727 - 34872675
Alignment:
Q  282 aaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  34872727 aaattttagggttaattaagtttttagtccctataaatattcacagttttgtt 34872675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 27519443 - 27519493
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| | || ||||||||||||||||||||||||    
T  27519443 attttagggttaattaagtttttggtccctataaatatttacagttttgtt 27519493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 11140651 - 11140696
Alignment:
Q  289 aggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||    
T  11140651 aggcttaattaagtttttagtccctataaatattcacagttttgtt 11140696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 23678289 - 23678330
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  23678289 ttaattaagtttttagttcctataaatattcacagttttgtt 23678330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 13155717 - 13155657
Alignment:
Q  274 tttcatataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||| |  ||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  13155717 tttcatatataaattagggttaattaagtttttagtccctataaatattcacagttttgtt 13155657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 15890054 - 15890109
Alignment:
Q  279 tataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| | |||| ||||||||||||  ||| ||||||||||||||||||||||||    
T  15890054 tataaagtataggattaattaagttttcagtccctataaatatttacagttttgtt 15890109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 8082507 - 8082553
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||||||||||||| || |||||||||||    
T  8082507 tagggttaattaagtttttagttcctataaatgttcacagttttgtt 8082553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 36683409 - 36683355
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| ||| |||||||||||| |||| |||||||||||| | |||||||||    
T  36683409 ataaatttaagggttaattaagtttttagtccctataaatattcaaagttttgtt 36683355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 41738683 - 41738733
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| ||| |||||||||||| |||| |||||||||||| |||||||||||    
T  41738683 atttaagggttaattaagtttttagtccctataaatattcacagttttgtt 41738733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 42129396 - 42129346
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| || | |||||||||||| |||||||||||    
T  42129396 attttagggttaattaagtttttattccctataaatattcacagttttgtt 42129346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 2060756 - 2060797
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||| ||||||||||||    
T  2060756 ttaattaagtttttagtccctataaatatctacagttttgtt 2060797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 4017784 - 4017743
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  4017784 ttaattaagtttttagtgcctataaatattcacagttttgtt 4017743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 6472082 - 6472123
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  6472082 ttaattaagtttttagtccctataaatattcacagttttgtt 6472123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 7057470 - 7057429
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7057470 ttaattaagtttttagtccctataaatattcacagttttgtt 7057429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 7288007 - 7288048
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7288007 ttaattaagtttttagtccctataaatattcacagttttgtt 7288048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 10167508 - 10167549
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  10167508 ttaattaagtttttagtccctataaatattcacagttttgtt 10167549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 10579311 - 10579270
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  10579311 ttaattaagtttttagtccctataaatattcacagttttgtt 10579270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 10675355 - 10675404
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| | |||||||||    
T  10675355 ttttagggttaattaagtttttagtccctataaatattcatagttttgtt 10675404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 15105103 - 15105062
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  15105103 ttaattaagtttttagtccctataaatattcacagttttgtt 15105062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 16355843 - 16355884
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||| ||||||||||    
T  16355843 ttaattaagtttttagtccctataaatatttgcagttttgtt 16355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 25897896 - 25897937
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  25897896 ttaattaagtttttagttcctataaatatgtgcagttttgtt 25897937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 26097664 - 26097705
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  26097664 ttaattaagtttttagttcctataaatatctgcagttttgtt 26097705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 32974044 - 32974085
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  32974044 ttaattaagtttttagtccctataaatatttatagttttgtt 32974085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 38075257 - 38075216
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  38075257 ttaattaagtttttagtacctataaatatttatagttttgtt 38075216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 42217145 - 42217190
Alignment:
Q  287 ttaggcttaattaagtttctagttcctataaatatttacagttttg 332  Q
    ||||| |||||||||||| |||||  ||||||||||||||||||||    
T  42217145 ttagggttaattaagtttttagttgttataaatatttacagttttg 42217190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 43165830 - 43165789
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  43165830 ttaattaagtttttagtccctataaatattcacagttttgtt 43165789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 44163968 - 44164009
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  44163968 ttaattaagtttttagtccctataaatattgacagttttgtt 44164009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 44904633 - 44904682
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| || | |||||||||||| |||||||||||    
T  44904633 ttttagggttaattaagtttttaatccctataaatattcacagttttgtt 44904682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 44947895 - 44947846
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| || | |||||||||||| |||||||||||    
T  44947895 ttttagggttaattaagtttttaatccctataaatattcacagttttgtt 44947846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 42129127 - 42129171
Alignment:
Q  278 atataaattttaggcttaattaagtttctagttcctataaatatt 322  Q
    ||||||| |||||| |||||||||||| |||| ||||||||||||    
T  42129127 atataaaatttagggttaattaagtttttagtccctataaatatt 42129171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 43641861 - 43641817
Alignment:
Q  290 ggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  43641861 ggcttaattaagtttttagtccttataaatattcacagttttgtt 43641817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 46)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 5118408 - 5118454
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||||    
T  5118408 taggattaattaagtttttagtccctataaatatttacagttttgtt 5118454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 30187716 - 30187766
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  30187716 attttagggttaattaagtttttagtccctataaatattcacagttttgtt 30187766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 5905120 - 5905079
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  5905120 ttaattaagtttttagtccctataaatatttacagttttgtt 5905079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 7949189 - 7949148
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  7949189 ttaattaagtttttagtccctataaatatttacagttttgtt 7949148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 18279316 - 18279365
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  18279316 ttttagggttaattaagtttttagtccctataaatattcacagttttgtt 18279365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 29785615 - 29785656
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  29785615 ttaattaagtttttagtccctataaatatttacagttttgtt 29785656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 31163406 - 31163365
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  31163406 ttaattaagtttttagtccctataaatatttacagttttgtt 31163365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 35514751 - 35514792
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  35514751 ttaattaagtttttagtccctataaatatttacagttttgtt 35514792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 37109622 - 37109573
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||||||| |||||||    
T  37109622 ttttagggttaattaagtttttagtccctataaatatttacaattttgtt 37109573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 34578620 - 34578572
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| | ||||||||||||||||||||||    
T  34578620 tttagggttaattaagtttttagtccttataaatatttacagttttgtt 34578572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 41621371 - 41621419
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  41621371 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 41621419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 42396795 - 42396843
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  42396795 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 42396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 10862468 - 10862421
Alignment:
Q  287 ttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  10862468 ttagggttaattaagtttttagtccctataaatattcacagttttgtt 10862421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 42992260 - 42992311
Alignment:
Q  283 aattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||| |||||||||||| | || ||||||||||| ||||||||||||    
T  42992260 aattttagggttaattaagtttttggtccctataaatatctacagttttgtt 42992311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 7200869 - 7200915
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  7200869 tagggttaattaagtttttagtccctataaatattcacagttttgtt 7200915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 7948951 - 7948997
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  7948951 tagggttaattaagtttttagtgcctataaatattcacagttttgtt 7948997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 27279749 - 27279795
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  27279749 tagggttaattaagtttttagtccctataaatattcacagttttgtt 27279795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 39084412 - 39084458
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  39084412 tagggttaattaagtttttagtccctataaatattcacagttttgtt 39084458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 39084700 - 39084654
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  39084700 tagggttaattaagtttttagtccctataaatattcacagttttgtt 39084654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 857715 - 857674
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  857715 ttaattaagtttttagtccctataaatattcacagttttgtt 857674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 1950188 - 1950139
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| ||||||||||||  ||||||||||    
T  1950188 ttttagggttaattaagtttttagtccctataaatattcgcagttttgtt 1950139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 7401445 - 7401404
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7401445 ttaattaagtttttagtccctataaatattcacagttttgtt 7401404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 7730843 - 7730802
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7730843 ttaattaagtttttagtccctataaatattcacagttttgtt 7730802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 10862184 - 10862225
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  10862184 ttaattaagtttttagtccctataaatattcacagttttgtt 10862225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 14311132 - 14311173
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  14311132 ttaattaagtttttagtccctataaatattcacagttttgtt 14311173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 14347320 - 14347279
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  14347320 ttaattaagtttttagtccctataaatattcacagttttgtt 14347279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 18279120 - 18279079
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  18279120 ttaattaagtttttagtccctataaatattcacagttttgtt 18279079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 19089257 - 19089298
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  19089257 ttaattaagtttttagtccctataaatattcacagttttgtt 19089298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 19617913 - 19617954
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  19617913 ttaattaagtttttagtccctataaatattcacagttttgtt 19617954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 21052306 - 21052347
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  21052306 ttaattaagtttttagtccctataaatattcacagttttgtt 21052347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 21052584 - 21052543
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  21052584 ttaattaagtttttagtccctataaatattcacagttttgtt 21052543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 22225319 - 22225360
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  22225319 ttaattaagtttttagtccctataaatattcacagttttgtt 22225360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 24802068 - 24802105
Alignment:
Q  297 ttaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  24802068 ttaagtttttagtccctataaatatttacagttttgtt 24802105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 25353538 - 25353579
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  25353538 ttaattaagtttttagtccctataaatattcacagttttgtt 25353579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 25353820 - 25353775
Alignment:
Q  289 aggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||||||| || | |||||||||| |||||||||||||    
T  25353820 aggcttaattaagtttttaatccctataaataattacagttttgtt 25353775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 25947702 - 25947743
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||| ||||||||| |||||||||||    
T  25947702 ttaattaagtttttagttccaataaatattcacagttttgtt 25947743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 27280001 - 27279960
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  27280001 ttaattaagtttttagtccctataaatattcacagttttgtt 27279960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 28770577 - 28770618
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  28770577 ttaattaagtttttagtccctataaatattcacagttttgtt 28770618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 28770854 - 28770813
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  28770854 ttaattaagtttttagtccctataaatattcacagttttgtt 28770813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 30239234 - 30239275
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  30239234 ttaattaagtttttagtccctataaatattcacagttttgtt 30239275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 33866818 - 33866777
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  33866818 ttaattaagtttttagtccctataaatattcacagttttgtt 33866777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 39985972 - 39986013
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  39985972 ttaattaagtttttagtccctataaatattcacagttttgtt 39986013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 9129746 - 9129794
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| | |||||||||    
T  9129746 tttagggttaattaagtttttagtccctataaatattcatagttttgtt 9129794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 30239511 - 30239471
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  30239511 taattaagtttttagtccctataaatattcacagttttgtt 30239471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 33619856 - 33619896
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  33619856 taattaagtttttagtccctataaatattcacagttttgtt 33619896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 41907508 - 41907460
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| | |||||||||||||| | ||||||||||    
T  41907508 tttagggttaattaagtttttggttcctataaatatctgcagttttgtt 41907460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 1842707 - 1842657
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  1842707 attttagggttaattaagtttttagtccctataaatattcacagttttgtt 1842657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 3060628 - 3060587
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  3060628 ttaattaagtttttagtccctataaatatttacagttttgtt 3060587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 7603822 - 7603871
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  7603822 ttttagggttaattaagtttttagtccctataaatattcacagttttgtt 7603871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 53849844 - 53849893
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||||| |||||||||| |||||||||||    
T  53849844 ttttaggattaattaagtttttagttcttataaatattcacagttttgtt 53849893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 8412296 - 8412344
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  8412296 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 8412344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 32806971 - 32807023
Alignment:
Q  282 aaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| ||||| |||||||||||| ||||||||||||||||||| | |||||||    
T  32806971 aaatattagggttaattaagtttttagttcctataaatatttataattttgtt 32807023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 35023623 - 35023583
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  35023623 taattaagtttttagtccctataaatatttacagttttgtt 35023583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 35804440 - 35804400
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  35804440 taattaagtttttagtccctataaatatttacagttttgtt 35804400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 22519515 - 22519562
Alignment:
Q  287 ttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  22519515 ttagggttaattaagtttttagtccctataaatattcacagttttgtt 22519562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 23257252 - 23257197
Alignment:
Q  279 tataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| | || |||||||||||| |||| |||||||||||| |||||||||||    
T  23257252 tataaattattgggttaattaagtttttagtccctataaatattcacagttttgtt 23257197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 23275130 - 23275075
Alignment:
Q  279 tataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| | || |||||||||||| |||| |||||||||||| |||||||||||    
T  23275130 tataaattattgggttaattaagtttttagtccctataaatattcacagttttgtt 23275075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 8459334 - 8459388
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| || ||| |||||||||||| |||| |||||||||||| |||||||||||    
T  8459334 ataaaattaagggttaattaagtttttagtccctataaatattaacagttttgtt 8459388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 19320266 - 19320316
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| | || ||||||||||||| ||||||||||    
T  19320266 attttagggttaattaagtttttggtccctataaatatttgcagttttgtt 19320316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 29520748 - 29520702
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  29520748 tagggttaattaagtttttagtccctataaatattcacagttttgtt 29520702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 49488060 - 49488014
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  49488060 tagggttaattaagtttttagtccctataaatattcacagttttgtt 49488014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 51948072 - 51948118
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  51948072 tagggttaattaagtttttagtccctataaatattcacagttttgtt 51948118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 1842420 - 1842461
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  1842420 ttaattaagtttttagtccctataaatattcacagttttgtt 1842461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 2251605 - 2251564
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  2251605 ttaattaagtttttagtccctataaatattcacagttttgtt 2251564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 6452282 - 6452241
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  6452282 ttaattaagtttttagtccctataaatattcacagttttgtt 6452241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 8562652 - 8562693
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  8562652 ttaattaagtttttagtccctataaatattcacagttttgtt 8562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11338941 - 11338982
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  11338941 ttaattaagtttttagtccctataaatattcacagttttgtt 11338982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 11339219 - 11339178
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  11339219 ttaattaagtttttagtccctataaatattcacagttttgtt 11339178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 12759874 - 12759833
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  12759874 ttaattaagtttttagtccctataaatattcacagttttgtt 12759833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26441436 - 26441395
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  26441436 ttaattaagtttttagtccctataaatatttaaagttttgtt 26441395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 27704508 - 27704549
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  27704508 ttaattaagtttttagtccctataaatattcacagttttgtt 27704549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 35023347 - 35023388
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  35023347 ttaattaagtttttagtccctataaatattcacagttttgtt 35023388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 44596014 - 44595973
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  44596014 ttaattaagtttttagtcactataaatatttacagttttgtt 44595973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 46281460 - 46281513
Alignment:
Q  281 taaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| ||||| |||||||||||| |||| |||||||||||| ||| |||||||    
T  46281460 taaatattagggttaattaagtttttagtccctataaatattcacaattttgtt 46281513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 48149013 - 48148973
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  48149013 ttaattaagtttttagt-cctataaatatttacagttttgtt 48148973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 50309690 - 50309649
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  50309690 ttaattaagtttttagtccctataaatattcacagttttgtt 50309649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 52224326 - 52224367
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| | |||||||||||||| ||||||||||||    
T  52224326 ttaattaagtttttggttcctataaatatctacagttttgtt 52224367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 45647838 - 45647792
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||    
T  45647838 taggattaattaagtttttaattcctataaatatttacagttttgtt 45647792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11691589 - 11691630
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  11691589 ttaattaagtttttagtccctataaatatttacagttttgtt 11691630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 40127976 - 40127935
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  40127976 ttaattaagtttttagtccctataaatatttacagttttgtt 40127935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 46799589 - 46799548
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  46799589 ttaattaagtttttagttcctataaatattcacagttttgtt 46799548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 35119300 - 35119352
Alignment:
Q  282 aaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||| |||||||||||| |||| |||||||||||||| |||||||||    
T  35119300 aaattatagggttaattaagtttttagtccctataaatatttatagttttgtt 35119352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 36711101 - 36711053
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  36711101 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 36711053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 55453913 - 55453853
Alignment:
Q  274 tttcatataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||| | |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  55453913 tttcttataaaatctagggttaattaagtttttagtccctataaatattcacagttttgtt 55453853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 20222142 - 20222091
Alignment:
Q  283 aattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| ||| |||||||||||| |||| |||||||||||| |||||||||||    
T  20222142 aatttaagggttaattaagtttttagtccctataaatattcacagttttgtt 20222091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 40593897 - 40593850
Alignment:
Q  287 ttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  40593897 ttagggttaattaagtttttagtccctataaatattcacagttttgtt 40593850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 2008673 - 2008719
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  2008673 tagggttaattaagtttttagtccctataaatattcacagttttgtt 2008719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 42928689 - 42928643
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  42928689 tagggttaattaagtttttagtccctataaatattcacagttttgtt 42928643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 49422293 - 49422339
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  49422293 tagggttaattaagtttttagtgcctataaatattcacagttttgtt 49422339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 54767637 - 54767675
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagtttt 331  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  54767637 ttaattaagtttttagtccctataaatatttacagtttt 54767675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 55453607 - 55453657
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| ||||  ||||||||||| |||||||||||    
T  55453607 attttaggattaattaagtttttagtcgctataaatattcacagttttgtt 55453657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 9557566 - 9557607
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  9557566 ttaattaagtttttagtccctataaatattcacagttttgtt 9557607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 11691867 - 11691826
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  11691867 ttaattaagtttttagtccctataaatattcacagttttgtt 11691826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11899714 - 11899755
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  11899714 ttaattaagtttttagttcctataaatattcacaattttgtt 11899755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 11936056 - 11936015
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  11936056 ttaattaagtttttagtccctataaatattcacagttttgtt 11936015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 15043490 - 15043531
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| | ||||||||||||||||||||||    
T  15043490 ttaattaagtttttagtccttataaatatttacagttttgtt 15043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 21212114 - 21212073
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  21212114 ttaattaagtttttagtccctataaatattcacagttttgtt 21212073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 24681444 - 24681485
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| || | ||||||||||||||||||||||||    
T  24681444 ttaattaagtttttattccctataaatatttacagttttgtt 24681485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 29359032 - 29359073
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  29359032 ttaattaagtttttagtccctataaatattcacagttttgtt 29359073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 36710805 - 36710857
Alignment:
Q  281 taaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| ||| |||||||||||| |||| |||||||||||| |||||||||||    
T  36710805 taaatttaagggttaattaagtttttagt-cctataaatattcacagttttgtt 36710857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 42489614 - 42489655
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  42489614 ttaattaagtttttagtttctataaatattcacagttttgtt 42489655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 42541547 - 42541506
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  42541547 ttaattaagtttttagtccctataaatattcacagttttgtt 42541506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 43563529 - 43563582
Alignment:
Q  281 taaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| || |||||||||||| |||| | |||||||||| |||||||||||    
T  43563529 taaatttttgggttaattaagtttttagtccttataaatattcacagttttgtt 43563582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 44035593 - 44035634
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| ||||| ||||||||||||||||| |||||||||||    
T  44035593 ttaattgagtttttagttcctataaatattcacagttttgtt 44035634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 44035871 - 44035830
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  44035871 ttaattaagtttttagtccctataaatattcacagttttgtt 44035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 45954196 - 45954155
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  45954196 ttaattaagtttttagtccctataaatattcacagttttgtt 45954155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 46175882 - 46175841
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||  |||| ||||||||||||||||||||||||    
T  46175882 ttaattaagttattagtccctataaatatttacagttttgtt 46175841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 46289684 - 46289643
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||||  |||||||||||||||| |||||||||||    
T  46289684 ttaattaagttttcagttcctataaatattcacagttttgtt 46289643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 50001382 - 50001341
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  50001382 ttaattaagtttttagtccctataaatattcacagttttgtt 50001341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 15043776 - 15043728
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| | |||||||||| |||| |||||||||||| |||||||||||    
T  15043776 tttagggtcaattaagtttttagtccctataaatattcacagttttgtt 15043728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 45692913 - 45692953
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  45692913 taattaagtttttagtccctataaatattcacagttttgtt 45692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 49804139 - 49804193
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  49804139 ataaattataggattaattaagtttttagtccctataaatattcacagttttgtt 49804193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 49804398 - 49804357
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  49804398 ttaattaagtttttagtccctataaatatttacagttttgtt 49804357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 51353381 - 51353333
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttg 332  Q
    |||||||| |||||||||||| |||| |||||||||||| |||||||||    
T  51353381 attttagggttaattaagtttttagtccctataaatattcacagttttg 51353333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 34340866 - 34340811
Alignment:
Q  279 tataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||  ||| ||||||||||||  ||| ||||||||||||||||||||||||    
T  34340866 tataaattcaagggttaattaagttttcagtccctataaatatttacagttttgtt 34340811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 25137278 - 25137224
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||||||||||| | || ||||||||||| | ||||||||||    
T  25137278 ataaattttagggttaattaagtttttggtccctataaatatctgcagttttgtt 25137224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 35937672 - 35937718
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  35937672 tagggttaattaagtttttagtccctataaatattcacagttttgtt 35937718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 52752198 - 52752244
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  52752198 tagggttaattaagtttttagtccctataaatattcacagttttgtt 52752244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 3617136 - 3617177
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  3617136 ttaattaagtttttagtccctataaatattcacagttttgtt 3617177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 5333494 - 5333535
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||||||| |||||||    
T  5333494 ttaattaagtttttagtccctataaatatttacatttttgtt 5333535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 5562919 - 5562878
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  5562919 ttaattaagtttttagtctctataaatatttacagttttgtt 5562878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 6056800 - 6056841
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  6056800 ttaattaagtttttagtccctataaatattcacagttttgtt 6056841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 6057136 - 6057177
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  6057136 ttaattaagtttttagtccctataaatattcacagttttgtt 6057177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 6057390 - 6057341
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| ||| |||||||    
T  6057390 ttttagggttaattaagtttttagtccctataaatattcacaattttgtt 6057341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 6764061 - 6764020
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| | ||||||||||||||||||||||    
T  6764061 ttaattaagtttttagtccttataaatatttacagttttgtt 6764020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 7065253 - 7065212
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7065253 ttaattaagtttttagtccctataaatattcacagttttgtt 7065212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 14421777 - 14421736
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  14421777 ttaattaagtttttagtccctataaatattcacagttttgtt 14421736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 28250429 - 28250380
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| | || |||||||||||| |||||||||||    
T  28250429 ttttagggttaattaagttttttgtccctataaatattcacagttttgtt 28250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 42928899 - 42928858
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| ||||||| |||| ||||||||||||||||||||||||    
T  42928899 ttaaataagtttttagtccctataaatatttacagttttgtt 42928858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 48795465 - 48795424
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  48795465 ttaattaagtttttagtccctataaatattcacagttttgtt 48795424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 51053516 - 51053557
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  51053516 ttaattaagtttttagtccctataaatattcacagttttgtt 51053557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 51549900 - 51549852
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  51549900 ttttagggttaattaagttt-tagtccctataaatattcacagttttgtt 51549852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 44806575 - 44806611
Alignment:
Q  283 aattttaggcttaattaagtttctagttcctataaat 319  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  44806575 aattttagggttaattaagtttttagttcctataaat 44806611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 48623694 - 48623742
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| | || ||||||||||| ||||||||||||    
T  48623694 tttagggttaattaagtttttggtccctataaatatctacagttttgtt 48623742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 51345707 - 51345659
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| ||||||||||||||  ||||||||    
T  51345707 tttagggttaattaagtttttagtccctataaatatttatggttttgtt 51345659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 43143 - 43090
Alignment:
Q  281 taaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  43143 taaattatagggttaattaagtttttagtccctataaatattcacagttttgtt 43090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11831989 - 11832030
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  11831989 ttaattaagtttttagttcctataaatattcacagttttgtt 11832030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 22745047 - 22745088
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  22745047 ttaattaagtttttagttcctataaatattcacagttttgtt 22745088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 37331348 - 37331307
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  37331348 ttaattaagtttttagttcctataaatattcacagttttgtt 37331307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 44887587 - 44887546
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  44887587 ttaattaagtttttagtccctataaatatttacagttttgtt 44887546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 21047554 - 21047602
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  21047554 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 21047602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 37220161 - 37220209
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  37220161 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 37220209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 19578999 - 19579042
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagtttt 331  Q
    |||| |||||||||||| |||| |||||||||||||||||||||    
T  19578999 tagggttaattaagtttttagtccctataaatatttacagtttt 19579042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 46789823 - 46789769
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||||||||||| || | |||||||||||| ||| |||||||    
T  46789823 ataaattttagggttaattaagtttttaatccctataaatattcacatttttgtt 46789769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 2285639 - 2285598
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  2285639 ttaattaagtttttagtccctataaatattcacagttttgtt 2285598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 8761409 - 8761368
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  8761409 ttaattaagtttttagtccctataaatattcacagttttgtt 8761368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 19532701 - 19532660
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  19532701 ttaattaagtttttagtccctataaatattcacagttttgtt 19532660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 19837433 - 19837482
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| || | |||||||||||| |||||||||||    
T  19837433 ttttagggttaattaagtttttaatccctataaatattcacagttttgtt 19837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 21994054 - 21994013
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  21994054 ttaattaagtttttagtccctataaatattcacagttttgtt 21994013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26626532 - 26626491
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||||| | |||||||    
T  26626532 ttaattaagtttttagttcctataaatatttagaattttgtt 26626491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 30071697 - 30071742
Alignment:
Q  289 aggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||||||| |||| | |||||||||| |||||||||||    
T  30071697 aggcttaattaagtttttagtccttataaatattcacagttttgtt 30071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 30085335 - 30085376
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  30085335 ttaattaagtttttagtccctataaatattcacagttttgtt 30085376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 31521139 - 31521188
Alignment:
Q  279 tataaattttaggcttaattaagtttctagttcctataaatatttacagt 328  Q
    |||||||| || | |||||||||||| ||||||||||||||||| |||||    
T  31521139 tataaattatatgattaattaagtttttagttcctataaatattcacagt 31521188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 33253861 - 33253820
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  33253861 ttaattaagtttttagtccctataaatattcacagttttgtt 33253820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 37712415 - 37712456
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  37712415 ttaattaagtttttagtccctataaatattcacagttttgtt 37712456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 38444694 - 38444645
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||| ||||| |||| |||||||||||| |||||||||||    
T  38444694 ttttagggttaatttagtttttagtccctataaatattcacagttttgtt 38444645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 38730283 - 38730324
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| || | ||||||||||||||||||||||||    
T  38730283 ttaattaagtttttaatccctataaatatttacagttttgtt 38730324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 40081662 - 40081703
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| ||| |||| ||||||||||||||||||||||||    
T  40081662 ttaattaattttttagtccctataaatatttacagttttgtt 40081703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 40619958 - 40619917
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| | ||||||||||||||||||||||    
T  40619958 ttaattaagtttttagtccttataaatatttacagttttgtt 40619917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 41492614 - 41492573
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  41492614 ttaattaagtttttagtccctataaatattcacagttttgtt 41492573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 43977688 - 43977647
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  43977688 ttaattaagtttttagtccctataaatattcacagttttgtt 43977647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 44157925 - 44157974
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| || | |||||||||||| |||||||||||    
T  44157925 ttttaggattaattaagtttttaatccctataaatattcacagttttgtt 44157974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 45803214 - 45803255
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  45803214 ttaattaagtttttagtccctataaatattcacagttttgtt 45803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 46789562 - 46789603
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  46789562 ttaattaagtttttagtccctataaatattcacagttttgtt 46789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 38730508 - 38730460
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| ||||   ||||||||||||||||||||||    
T  38730508 tttagggttaattaagtttttagtctttataaatatttacagttttgtt 38730460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 44719536 - 44719572
Alignment:
Q  298 taagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  44719536 taagtttttagtccctataaatatttacagttttgtt 44719572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 8979079 - 8979128
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  8979079 ttttagggttaattaagtttttagtccctataaatattcacagttttgtt 8979128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 18030927 - 18030886
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  18030927 ttaattaagtttttagttcctataaatattcacagttttgtt 18030886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 18328125 - 18328084
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  18328125 ttaattaagtttttagtccctataaatatttacagttttgtt 18328084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 20026043 - 20026084
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  20026043 ttaattaagtttttagttcctataaatattcacagttttgtt 20026084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 24045991 - 24045950
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  24045991 ttaattaagtttttagttcctataaatattcacagttttgtt 24045950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 32462122 - 32462163
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  32462122 ttaattaagtttttagtccctataaatatttacagttttgtt 32462163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 32462400 - 32462359
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  32462400 ttaattaagtttttagttcctataaatattcacagttttgtt 32462359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 8979363 - 8979323
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  8979363 taattaagtttttagtccctataaatatttacagttttgtt 8979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 32647267 - 32647219
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  32647267 tttagggttaattaagtttttagtccctataaatattcacagttttgtt 32647219  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 3992622 - 3992583
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttg 332  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  3992622 ttaattaagtttttagttcctataaatattcacagttttg 3992583  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 12757522 - 12757479
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagtttt 331  Q
    |||| |||||||||||| |||| |||||||||||||||||||||    
T  12757522 tagggttaattaagtttttagtccctataaatatttacagtttt 12757479  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 25059344 - 25059395
Alignment:
Q  283 aattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| ||| |||||||||||| |||| |||||||||||| |||||||||||    
T  25059344 aatttaagggttaattaagtttttagtccctataaatattcacagttttgtt 25059395  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 6366498 - 6366548
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| |||||||||||| |||| |||| ||||||| |||||||||||    
T  6366498 attttagggttaattaagtttttagtccctacaaatattcacagttttgtt 6366548  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 12145314 - 12145360
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  12145314 tagggttaattaagtttttagtccctataaatattcacagttttgtt 12145360  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 15837391 - 15837441
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| || |||||||||||| ||||||||||||||||| ||| |||||||    
T  15837391 atttttgggttaattaagtttttagttcctataaatattaacaattttgtt 15837441  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 19779541 - 19779587
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||||    
T  19779541 tagggttaattaagtttttagtccctataaatattcacagttttgtt 19779587  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 29681886 - 29681840
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| |||| |||||||||||||||||||    
T  29681886 tagggttaattaagtttttagtccctaaaaatatttacagttttgtt 29681840  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 30579269 - 30579319
Alignment:
Q  284 attttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| || ||||||||| |||| |||||||||||| |||||||||||    
T  30579269 attttagggtttattaagtttttagtccctataaatattcacagttttgtt 30579319  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 4062651 - 4062610
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  4062651 ttaattaagtttttagtccctataaatattcacagttttgtt 4062610  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 7620950 - 7620991
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  7620950 ttaattaagtttttagtccctataaatattcacagttttgtt 7620991  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 14864046 - 14864005
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||| ||| |||| ||||||||||||||||||||||||    
T  14864046 ttaattaaatttttagtccctataaatatttacagttttgtt 14864005  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 16539259 - 16539300
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  16539259 ttaattaagtttttagtccctataaatattcacagttttgtt 16539300  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 18030649 - 18030690
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||||||||||||||  |||||||||||    
T  18030649 ttaattaagtttttagttcctataaatatacacagttttgtt 18030690  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 18501723 - 18501764
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  18501723 ttaattaagtttttagtccctataaatattcacagttttgtt 18501764  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 22787202 - 22787243
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  22787202 ttaattaagtttttagtccctataaatattcacagttttgtt 22787243  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 24796963 - 24797004
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| | ||||||||||||||||||||||    
T  24796963 ttaattaagtttttagtccttataaatatttacagttttgtt 24797004  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 25059601 - 25059560
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  25059601 ttaattaagtttttagtttctataaatattcacagttttgtt 25059560  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 31052350 - 31052309
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  31052350 ttaattaagtttttagtccctataaatattcacagttttgtt 31052309  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 32646982 - 32647023
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  32646982 ttaattaagtttttagtccctataaatattcacagttttgtt 32647023  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 9242373 - 9242421
Alignment:
Q  286 tttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||| |||||||||||| |||| |||||||||||||| | |||||||    
T  9242373 tttagggttaattaagtttttagtccctataaatatttagaattttgtt 9242421  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 22787479 - 22787439
Alignment:
Q  294 taattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  22787479 taattaagtttttagtccctataaatattcacagttttgtt 22787439  T

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Target: scaffold0991 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 660 - 706
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| |||| ||||||||||||| ||||||||||    
T  660 tagggttaattaagtttttagtccctataaatatttgcagttttgtt 706  T

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Target: scaffold0175 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 26443 - 26489
Alignment:
Q  288 taggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||| |||||||||||| ||||||||||||||||| || ||||||||    
T  26443 tagggttaattaagtttttagttcctataaatattcacggttttgtt 26489  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 17653 - 17599
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||||| |||||||||||| | || ||||||||||| ||||||||||||    
T  17653 ataaactttagggttaattaagtttttggtccctataaatatctacagttttgtt 17599  T

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Target: scaffold0029; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 42666 - 42612
Alignment:
Q  280 ataaattttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||| |||||| |||||||||||| | || ||||||||||| ||||||||||||    
T  42666 ataaactttagggttaattaagtttttggtccctataaatatctacagttttgtt 42612  T

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Target: scaffold0283 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 3874 - 3825
Alignment:
Q  285 ttttaggcttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    ||||||| |||||||||||| || | |||||||||||| |||||||||||    
T  3874 ttttagggttaattaagtttttaatccctataaatattcacagttttgtt 3825  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 49078 - 49037
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  49078 ttaattaagtttttagtttctataaatattcacagttttgtt 49037  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 37617 - 37658
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  37617 ttaattaagtttttagtccctataaatattcacagttttgtt 37658  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 262637 - 262678
Alignment:
Q  293 ttaattaagtttctagttcctataaatatttacagttttgtt 334  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  262637 ttaattaagtttttagtccctataaatattcacagttttgtt 262678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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