View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_9 (Length: 718)
Name: NF1343_high_9
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 366 - 710
Target Start/End: Complemental strand, 21314378 - 21314033
Alignment:
| Q |
366 |
ataacatttttccccctgcaagctcaaattcaccactcttatacaacaagattgatgatgtgagggcaattgttctaaatttcc-aaaggactatgttcg |
464 |
Q |
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| T |
21314378 |
ataacattttttcccctgcaagctcaaattcaccactcttatacaacaagattgatgatgtgagggcaattgtcctgaatttcccaaaggactatgttcg |
21314279 |
T |
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| Q |
465 |
atggtccaagatattttctagacgatccaaagcatacgctcgatggtacaagggctatgcttgacaatccatatgttgaacatagatccaacaccataag |
564 |
Q |
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| T |
21314278 |
atggtccaagatatttgctagacgatccaaagcatatgctcgatggtacaagggatatgcttgacaatccatatgttgaacatagatccaacaccataag |
21314179 |
T |
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| Q |
565 |
aggacctacatcgtactctcggcccaccattgtttcgtctaccatagacctaatatagagaaaggccaaatacacatatttggtcgttgatactatatgc |
664 |
Q |
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| T |
21314178 |
aggacctacattgtgctctcggcccaccattgtttcgtctaccatagacctaatatagagaaaggccaaatactcatatttggtcgttgatactatatgc |
21314079 |
T |
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| Q |
665 |
atcctttgttcgaaacctagaactacaacaaataggagcctatgat |
710 |
Q |
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| T |
21314078 |
atcctttgttcgaaacctagaactacaacaaataggagcttatgat |
21314033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 34 - 369
Target Start/End: Complemental strand, 21314788 - 21314454
Alignment:
| Q |
34 |
ccccatcttccttgttcgacacatttactcactctacgagattattcatgtatttgtcctcgacaatacttttctctccccacaagaccattaagcttat |
133 |
Q |
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| T |
21314788 |
ccccatcttccttgttcgacacatttactcactctacgagattattcatgtatttgtcctcgacaacacttttctctccccacaagaacattaagcttat |
21314689 |
T |
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| Q |
134 |
tgtcctcataaacacatctactttccatatgagactatgcatgtaattgactttgacaatactttttgctatccccttgagaccatgaagcaaatagtca |
233 |
Q |
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| T |
21314688 |
tgtcctcagaaacacatctactttccatatgagactatgaatgtaattgactttgacaatactttt-gctatccccttgagaccatgaagcaaatagtca |
21314590 |
T |
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| Q |
234 |
tcgaaaaaacattttctcgtggtgagactataaagttaattgcactcacaataacttttctctcctcaagagataatgaaacaaattgtactcgacaata |
333 |
Q |
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| T |
21314589 |
tcgaaaatacattttctcgtggcgagactataaagttaattgcactcacaataacttttctctcctcaagagataatgaaacaaattgtactcgaccata |
21314490 |
T |
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| Q |
334 |
tattttctctccgtgcaagacaattatcctcaataa |
369 |
Q |
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| T |
21314489 |
tattttctctccgtgcaagaaaattatcctcgataa |
21314454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 51075833 - 51075761
Alignment:
| Q |
502 |
gctcgatggtacaagggctatgcttgacaatccatatgttgaacatagatccaacaccataagaggacctaca |
574 |
Q |
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| T |
51075833 |
gctcgacggttcaagggctatgctcaacaacccatattttagatataaatccaacaccataagaggacctaca |
51075761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 7134517 - 7134459
Alignment:
| Q |
390 |
caaattcaccactcttatacaacaagattgatgatgtga-gggcaattgttctaaattt |
447 |
Q |
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|||| ||||||||||||| |||||||||||||||| ||| |||||| | |||||||||| |
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| T |
7134517 |
caaagtcaccactcttattcaacaagattgatgatttgaggggcaactattctaaattt |
7134459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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