View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_94 (Length: 313)
Name: NF1343_high_94
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_94 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 8416117 - 8416348
Alignment:
| Q |
7 |
aggagcagagagaaatgtaaagacatgaagnnnnnnnnntaaggagtaggatagaggagaaatgatggagataaaaatatacaatcattttcaatcttat |
106 |
Q |
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| T |
8416117 |
aggagaagagagaaatgtaaagacatgaagaaaaaaaa-taaggagtaggatagaggagaaatgatggagataaaaatatgcaatcattttcaatcttat |
8416215 |
T |
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| Q |
107 |
gttgtaaagggagacttttaagcactaataaatcactaacaatgtccatcaaaattttgaagtacttttttaataccac------nnnnnnnnnttgaag |
200 |
Q |
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| T |
8416216 |
gttgtaaagggagacttttaagcactaataaatcactaacaatgtccatcaaaattttgaagtacttttttaataccacaaaaaaaaaaaaaaattgaag |
8416315 |
T |
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| Q |
201 |
gaaccacaaaacttttttgtaagcggtaaaaat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8416316 |
gaaccacaaaacttttttgtaagcggtaaaaat |
8416348 |
T |
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