View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_98 (Length: 312)
Name: NF1343_high_98
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_98 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 42 - 300
Target Start/End: Complemental strand, 42980637 - 42980369
Alignment:
| Q |
42 |
tttgatttcttttcatcttataaaacaaacagccatggatgtctagagcatatgatccgtgtaccgaaaggcattctgatgtgtatttcaatcgtccaga |
141 |
Q |
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| T |
42980637 |
tttgatttcttttcatcttataaaacaaacagccatggatgtctagagcatatgatccgtgtaccgaaaggcattctgatgtgtatttcaatcgtccaga |
42980538 |
T |
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| Q |
142 |
agtgcagaaggcgcttcatgccaatgttacagggattccatatatttggaagacatgcaggtatattattttcaattaatgtcgaacac----------g |
231 |
Q |
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| T |
42980537 |
agtgcagaaggcgcttcatgccaatgttacagggattccatatatttggaagacatgcaggtatattattttcaattaatgtcgaacacgttctattgag |
42980438 |
T |
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| Q |
232 |
gtctattctattggactgattccccatatattaaaaggtttcttattttcatttcttgacagtgatatt |
300 |
Q |
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| T |
42980437 |
gtctattctattggactgattccccatatattaaaaggtttcttattttcatttcttgacagtgatatt |
42980369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 42974164 - 42974030
Alignment:
| Q |
71 |
cagccatggatgtctagagcatatgatccgtgtaccgaaaggcattctgatgtgtatttcaatcgtccagaagtgcagaaggcgcttcatgccaatgtta |
170 |
Q |
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| T |
42974164 |
cagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagttcagaaggcacttcatgccaatgtaa |
42974065 |
T |
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| Q |
171 |
cagggattccatatatttggaagacatgcaggtat |
205 |
Q |
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| T |
42974064 |
ctgggatttcatatgcttggaaggcatgcaggtat |
42974030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 31581832 - 31581864
Alignment:
| Q |
6 |
aaaatatccattggatttgaatgcaacagctag |
38 |
Q |
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| T |
31581832 |
aaaatatccattggatttgaatgcaacagctag |
31581864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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