View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_1 (Length: 1139)
Name: NF1343_low_1
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_1 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 895; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 895; E-Value: 0
Query Start/End: Original strand, 93 - 1136
Target Start/End: Complemental strand, 54727458 - 54726435
Alignment:
| Q |
93 |
tttaggactataatcttgagaaattatgaaaataattggaannnnnnnnnnnnnn-caatgaaggttgtaagatctggtgatttggtttcttactgtgct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54727458 |
tttaggactataatcttgagaaattatgaaaataattggaatttttttatttttttcaatgaaggttgtaagatctggtgatttggtttcttactgtgct |
54727359 |
T |
|
| Q |
192 |
gaagaaggagtaaggattcttggagagggaaagtttctggtttcagatagctttccgggaaatgaaaggaccaaatattgcctcacttccaaggtctatt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54727358 |
gaagaaggagtaaggattcttggagagggaaagtttctggtttcagatagctttccgggaaatgaaaggaccaaatattgcctcacttccaaggtctatt |
54727259 |
T |
|
| Q |
292 |
tcactacatattttacttaatattcaaatcataagttactatatacttcaatcattttagaactggaaaatcaataggacaatatactttataaagtcaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54727258 |
tcactacatattttacttaatattcaaatcataagttactatatacttcaatcattttagaactggaaaatcaataggacaatatactttataaagtcaa |
54727159 |
T |
|
| Q |
392 |
taaattgacacaacatcaaaatcctgagatacattcaagggtgtggtatatctgcattacattcaattatcttagtaacttataaagaattgtaaattaa |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54727158 |
taaattgacacaacatcaaaatcctgagatacattcaagggtgtggtatatctgcattacattcaattatcttagtaacttataaagaattgtaaattaa |
54727059 |
T |
|
| Q |
492 |
atgatcatggtgaaatgtcatgtgttatcttattgttttgttttgcttggttgacgatgtggtctaagaaagctgcacttgattttcagatcccattagg |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54727058 |
atgatcatggtgaaatgtcatgtgttatcttattgttttgttttgcttggttgacgatgtggtctaagaaagctgcacttgattttcagatcccattagg |
54726959 |
T |
|
| Q |
592 |
agtgatcttagccattccaccttttaactatcctgtcaatcttgctgtctcaaaaattgctccagcactcattgctggaaattctattgtgctcaagcct |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54726958 |
agtgatcttagccattccaccttttaactatcctgtcaatcttgctgtctcaaaaattgctcctgcactcattgctggaaattctattgtgctcaagcct |
54726859 |
T |
|
| Q |
692 |
ccaactcaggtaatttatatccttcattgtgatacttgtgaaaaatactacacgtgggatccatattctcatactatccactttctcatggccctgtttt |
791 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54726858 |
ccaactcaggtaatttatatccttcattatgatacttgtaaaaaatactacacgtgggatccatattctcatactatccactttcttatggccctgtttt |
54726759 |
T |
|
| Q |
792 |
gataaaaagcttaatcaagaacttatagattaagcatttatcacataagtcatttctataacaaataaaataaactcttaactattttcatataggctat |
891 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54726758 |
gataaaaagcttaatcaagaacttatagattaagaatttatcacataattcatttctataacaaataaaataaactcttaactattttcatataggctat |
54726659 |
T |
|
| Q |
892 |
aaactgttttcataataagctgacaacaacttattggcatgtcataagcaatttccattagctctaacaaacacttgtgattacgcttgtaaataagctc |
991 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54726658 |
aaactgttttcataataagctgacaacaacttattggcatgtcataagcaatttccattagctctaacaaacacttgtgattacgcttgtaaataagctc |
54726559 |
T |
|
| Q |
992 |
aaataaatcaatccaaacaggccctacgtcataaaagttctagcttatgtctgagccgttaaaagaaaccaaaacaaaaagtttatgtcagaattttcaa |
1091 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54726558 |
aaataaatcaatccaaacaggccctacgtcataaaagttctagc---------------------aaaccaaaacaaaaagtttatgtcagaattttcaa |
54726480 |
T |
|
| Q |
1092 |
gtcttattttctttattgttccttctaatgggtctgtggtgctgc |
1136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
54726479 |
gtcttattttctttattgttccttctaatgggtctatgatgctgc |
54726435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 3007255 - 3007387
Alignment:
| Q |
154 |
aggttgtaagatctggtgatttggtttcttactgtgctgaagaaggagtaaggattcttggagagggaaagtttctggtttcagatagctttccgggaaa |
253 |
Q |
| |
|
||||||| ||||| || |||||||| || || ||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || |
|
|
| T |
3007255 |
aggttgttagatcaggggatttggtgtcatattgtgccgaggaaggagtaagaattctcggagaaggaaagtttctggtgtctgatagttttccaggcaa |
3007354 |
T |
|
| Q |
254 |
tgaaaggaccaaatattgcctcacttccaaggt |
286 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||| |
|
|
| T |
3007355 |
tgaaagaaccaaatactgtctcacatcaaaggt |
3007387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 599 - 703
Target Start/End: Original strand, 3007483 - 3007587
Alignment:
| Q |
599 |
ttagccattccaccttttaactatcctgtcaatcttgctgtctcaaaaattgctccagcactcattgctggaaattctattgtgctcaagcctccaactc |
698 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |||||| | ||||||||||| || ||||| || || |||||||| | |
|
|
| T |
3007483 |
ttagccattccaccttttaactatcctgttaatctagctgtttcaaagattggtccagctattattgctggaaactccattgtccttaaacctccaaccc |
3007582 |
T |
|
| Q |
699 |
aggta |
703 |
Q |
| |
|
||||| |
|
|
| T |
3007583 |
aggta |
3007587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 871 - 906
Target Start/End: Complemental strand, 48830164 - 48830129
Alignment:
| Q |
871 |
aactattttcatataggctataaactgttttcataa |
906 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48830164 |
aactattttcatataagctataaactgttttcataa |
48830129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 984 - 1017
Target Start/End: Original strand, 15558336 - 15558369
Alignment:
| Q |
984 |
ataagctcaaataaatcaatccaaacaggcccta |
1017 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
15558336 |
ataagctcaaataactcaatccaaacaggcccta |
15558369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 783 - 841
Target Start/End: Complemental strand, 43456877 - 43456819
Alignment:
| Q |
783 |
ccctgttttgataaaaagcttaatcaagaacttatagattaagcatttatcacataagt |
841 |
Q |
| |
|
|||||||| |||||||| |||||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
43456877 |
ccctgtttcgataaaaaacttaattaagcacttatagcataagcatttatcacataagt |
43456819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 980 - 1017
Target Start/End: Original strand, 1830160 - 1830197
Alignment:
| Q |
980 |
gtaaataagctcaaataaatcaatccaaacaggcccta |
1017 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
1830160 |
gtaaataaactcaaataagtcaatccaaacaggcccta |
1830197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 905 - 956
Target Start/End: Original strand, 27616 - 27667
Alignment:
| Q |
905 |
aataagctgacaacaacttattggcatgtcataagcaatttccattagctct |
956 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||| |||||||| |||||| |
|
|
| T |
27616 |
aataagctgaaaacaacttatagccatgtcataagctatttccataagctct |
27667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 980 - 1010
Target Start/End: Original strand, 4420742 - 4420772
Alignment:
| Q |
980 |
gtaaataagctcaaataaatcaatccaaaca |
1010 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4420742 |
gtaaataagctcaaataaatcaatccaaaca |
4420772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 984 - 1017
Target Start/End: Complemental strand, 19800402 - 19800369
Alignment:
| Q |
984 |
ataagctcaaataaatcaatccaaacaggcccta |
1017 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
19800402 |
ataagctcaaataaatcaatccaaacaagcccta |
19800369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 980 - 1013
Target Start/End: Original strand, 11707164 - 11707197
Alignment:
| Q |
980 |
gtaaataagctcaaataaatcaatccaaacaggc |
1013 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
11707164 |
gtaaataagctcaaataagtcaatccaaacaggc |
11707197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 984 - 1017
Target Start/End: Complemental strand, 25459575 - 25459542
Alignment:
| Q |
984 |
ataagctcaaataaatcaatccaaacaggcccta |
1017 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
25459575 |
ataagctcaaataaatcaatccaaacagacccta |
25459542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University