View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_101 (Length: 373)
Name: NF1343_low_101
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 344
Target Start/End: Original strand, 11983082 - 11983430
Alignment:
| Q |
4 |
gtgcaatttctggtgacaaagtgaatataccatgtttttaaatcccgccaacgttcttaatgttaaaaatgtcgataggattaaaaaccatgtgttccac |
103 |
Q |
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| T |
11983082 |
gtgcaatttatagtgacaaagtgaatataccatgtttttaaatcccgccaacgttcttaatgttaaaaatgtcgataggattaaaaaccatgtgttccac |
11983181 |
T |
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| Q |
104 |
caagtcactagcaactgtcacatgagacattatcatgactatcatctgacaacgtcccatattgcagccttcaatgaggaagtgaatgttatcaacgc-t |
202 |
Q |
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| T |
11983182 |
caagtcactagcaactgtcacatgagacattatcatgactatc-----acaacgtcccatattgcagcattcaacgaggaagtgaatgttatcaacgctt |
11983276 |
T |
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| Q |
203 |
gtttatttttgcgataaatgggacaagtttcccg-acca---nnnnnnncctgcacaacttttatgtgccgaagcaaaagaaagttgtggtcttttcatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11983277 |
gtttatttttgcgataaatgggacaagtttcccgaaccattttttttttcctgcacaactcttatgtgccgaagcaaaagaaagttgtggtcttttcatt |
11983376 |
T |
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| Q |
299 |
gagtttgtcacctgcc--------ttgcaaacaattgggtaaatgataatttag |
344 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
11983377 |
gagttagtcacctgccttaatatgttgcaaacaattgggtaaatgataatttag |
11983430 |
T |
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