View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_102 (Length: 371)
Name: NF1343_low_102
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_102 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 10238007 - 10237698
Alignment:
| Q |
1 |
ctgaccaagttccgatttcaaactaccttnnnnnnntggggtggtatagcaatataatttattgttattcaatgtcattgtaaaatttccatatttcctt |
100 |
Q |
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| T |
10238007 |
ctgaccaagttccgatttcaaactaccttataaaaatggggtggtatagcaatataatttattgttattcaatgtcattgtaaaatttccatatttcctt |
10237908 |
T |
|
| Q |
101 |
ttaattattgtttatccattcctttaccgtgtcttttgatattttgttttctttgctagacttgagttaccagattaatccatctgctggagttgcttat |
200 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10237907 |
ttaattattgtttatccgttcctttaccgtttcttttgatattttgttttctttgctagacctgagttaccagattaatccatctgctggagttgcttat |
10237808 |
T |
|
| Q |
201 |
gtgaaaggtaaagccgatccgataaaaattttattactgctaaagaagggaggacaacatgctacacttgaatggattagtcatggtattccaagagagg |
300 |
Q |
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| T |
10237807 |
gtgaaaggtaaagccgatccgataaaaattttattactgctaaagaagggaggacaacatgctacactcgaatggattagtcatggtattccaagagagg |
10237708 |
T |
|
| Q |
301 |
aaaaagccaa |
310 |
Q |
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|||||||||| |
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| T |
10237707 |
aaaaagccaa |
10237698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 36651001 - 36651061
Alignment:
| Q |
305 |
agccaatatcagactattataaatgttggcttcgccaaaacgcttttttggatactcatca |
365 |
Q |
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| T |
36651001 |
agccaatatcaaactattataaatgttggcttcgccaaaacgcttttttggatactcatca |
36651061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 36642433 - 36642376
Alignment:
| Q |
305 |
agccaatatcagactattataaatgttggcttcgccaaaacgcttttttggatactca |
362 |
Q |
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|||||||| |||| | ||||||| |||||||| ||||||| ||| ||||||||||||| |
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| T |
36642433 |
agccaataccagattgttataaacgttggctttgccaaaatgctgttttggatactca |
36642376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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