View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_106 (Length: 360)

Name: NF1343_low_106
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_106
NF1343_low_106
[»] chr5 (24 HSPs)
chr5 (104-276)||(31494131-31494303)
chr5 (121-269)||(31407428-31407576)
chr5 (121-276)||(31416554-31416709)
chr5 (140-276)||(31475949-31476085)
chr5 (149-276)||(40843331-40843458)
chr5 (191-269)||(31505911-31505989)
chr5 (163-274)||(31284687-31284798)
chr5 (163-268)||(31332169-31332274)
chr5 (163-269)||(31279500-31279606)
chr5 (165-269)||(31281405-31281509)
chr5 (171-269)||(31643895-31643993)
chr5 (163-268)||(31380954-31381059)
chr5 (213-269)||(31463034-31463090)
chr5 (171-258)||(31395737-31395824)
chr5 (163-269)||(31288456-31288562)
chr5 (186-272)||(31387812-31387898)
chr5 (171-265)||(31390848-31390942)
chr5 (202-272)||(31464975-31465045)
chr5 (163-268)||(31317328-31317433)
chr5 (163-268)||(31368542-31368647)
chr5 (163-276)||(31378676-31378789)
chr5 (193-276)||(31329924-31330007)
chr5 (171-276)||(31483655-31483760)
chr5 (208-272)||(31460376-31460440)
[»] chr3 (1 HSPs)
chr3 (150-238)||(25708394-25708482)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 104 - 276
Target Start/End: Complemental strand, 31494303 - 31494131
Alignment:
Q  104 cttgttgtatcattcattgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31494303 cttgttgtatcattcattgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttatt 31494204  T
Q  204 ggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattc 276  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31494203 ggattgctttgttatgctctaagctcttcgttcaaccatctatttggaaattggaatttgttgaaggtaattc 31494131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 31407576 - 31407428
Alignment:
Q  121 tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc 220  Q
    |||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||  |||||| |||||||| | |||||||||| ||||||||    
T  31407576 tgatacccgtgatcatccgaattcggatgtgcctgttgcagacaaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgttatgc 31407477  T
Q  221 tctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 269  Q
    ||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  31407476 tctcagcacttccttcaaccatctatttggaaattggaatttgttgaag 31407428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 276
Target Start/End: Complemental strand, 31416709 - 31416554
Alignment:
Q  121 tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc 220  Q
    |||||||  ||||||||| |||||||   ||||||||| |  |||||||||||||||||||  |||||||||| |||| | ||||| || ||||||||||    
T  31416709 tgataccgctgatcatccaaattcggtgttggctgttggaaacaaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgttatgc 31416610  T
Q  221 tctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattc 276  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31416609 tctaagctcttctttcaaccatctatttggaaattggaatttgttgaaggtaattc 31416554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 31476085 - 31475949
Alignment:
Q  140 aattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaac 239  Q
    ||||| || ||||||| || || |||| || |||||||||||  |||||| |||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  31476085 aattcagaggtggctgatgcagacaaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaac 31475986  T
Q  240 catctatttggaaattggaatttgttgaaggtaattc 276  Q
     ||||||||||||| ||||||||||||||| ||||||    
T  31475985 tatctatttggaaactggaatttgttgaagataattc 31475949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 40843458 - 40843331
Alignment:
Q  149 gtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctattt 248  Q
    |||||||||| || |||| || |||||||||||  | |||| |||||||| | ||||| || |||||||||||||||||||||| || ||| ||||||||    
T  40843458 gtggctgttgcagacaaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctattt 40843359  T
Q  249 ggaaattggaatttgttgaaggtaattc 276  Q
    ||||||||||||||||||||| ||||||    
T  40843358 ggaaattggaatttgttgaagataattc 40843331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 31505989 - 31505911
Alignment:
Q  191 ttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 269  Q
    |||||||||| |||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||| |||||||    
T  31505989 ttcagctgttgttggattgctttgttatgctctcagttcttcctttatccatctatttggaaattggaattggttgaag 31505911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 31284687 - 31284798
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||||||||||||||||||  |||||| |||| ||| ||||||| ||||||||||||||||||||||||| || ||| |||| |||||| | |||||| |    
T  31284687 caaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatct 31284786  T
Q  263 gttgaaggtaat 274  Q
    | ||||| ||||    
T  31284787 gctgaagataat 31284798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 31332169 - 31332274
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| |||||||||| || ||| | || |||||| | ||||||||    
T  31332169 caaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaattt 31332268  T
Q  263 gttgaa 268  Q
    ||||||    
T  31332269 gttgaa 31332274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 31279606 - 31279500
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||||||||||||||||||  |||||| ||||| |||| ||||| || ||||||||||||| |||||||| || ||| |||| |||||| | ||||||||    
T  31279606 caaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaattt 31279507  T
Q  263 gttgaag 269  Q
     ||||||    
T  31279506 cttgaag 31279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 31281405 - 31281509
Alignment:
Q  165 aaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgt 264  Q
    |||||||| || |||||  |||||| |||||||||| ||||| | |||||||||||| |||||||||| || ||  |||| |||||| ||||||||||||    
T  31281405 aaagtgtgcaggtttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgt 31281504  T
Q  265 tgaag 269  Q
    |||||    
T  31281505 tgaag 31281509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 31643993 - 31643895
Alignment:
Q  171 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 269  Q
    |||||||||||  |||||| |||| || || ||||| | |||||||||||||| |||||||| || ||| ||||||||||| |||||||| ||||||||    
T  31643993 tggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaag 31643895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 31380954 - 31381059
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| | |||||||| || ||  | || |||||| | ||||||||    
T  31380954 caaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaattt 31381053  T
Q  263 gttgaa 268  Q
    ||||||    
T  31381054 gttgaa 31381059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 31463090 - 31463034
Alignment:
Q  213 tgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 269  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  31463090 tgttatgctgtaagctcttccttcaaccatctatttggaaattggaacttgttgaag 31463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 31395737 - 31395824
Alignment:
Q  171 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattgga 258  Q
    |||||||||||| | | || |||||||||| ||||| |  ||||||||||||| |||||||| || || |||||||||||||| ||||    
T  31395737 tggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttccttcaatcatctatttggaaactgga 31395824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 31288456 - 31288562
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||||||||||||||||||  |||||| |||||||||| ||||| |||| | ||||| |||| ||||||| || ||  |||| | |||| | |||||| |    
T  31288456 caaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaatct 31288555  T
Q  263 gttgaag 269  Q
    |||||||    
T  31288556 gttgaag 31288562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 31387898 - 31387812
Alignment:
Q  186 tttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggta 272  Q
    ||||||||| ||||| ||||| |||||||||||||||| |||||||| || |  ||||||||||| || ||||| || || ||||||    
T  31387898 tttgtttcatctgttgttggactgctttgttatgctcttagctcttccttcactcatctatttgggaactggaacttttttaaggta 31387812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 31390942 - 31390848
Alignment:
Q  171 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgtt 265  Q
    ||||||||||| || |||   ||| || ||||||| || || |||||||||||||| ||||| || ||||||||||||||||| ||||| |||||    
T  31390942 tggagatttgtgagttttacatcatcttttattggcttcctctgttatgctctaagttcttccttcaaccatctatttggaaactggaacttgtt 31390848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 31465045 - 31464975
Alignment:
Q  202 ttggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggta 272  Q
    ||||| |||| ||||| ||||||||| |||| || || |||||||||||||| |||||||| |||||||||    
T  31465045 ttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggta 31464975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 31317328 - 31317433
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||| ||||||||||||||  |||||| |||| || || ||||| |  |||| |||||  |||||||||| |||||| |||| |||||| | ||||||||    
T  31317328 caaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaattt 31317427  T
Q  263 gttgaa 268  Q
    ||||||    
T  31317428 gttgaa 31317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 31368542 - 31368647
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||| ||||||||||||||  |||||| |||| || || ||||| |  |||| |||||| |||||||||| |||||| |||| |||||| | || |||||    
T  31368542 caaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaattt 31368641  T
Q  263 gttgaa 268  Q
    ||||||    
T  31368642 gttgaa 31368647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 31378676 - 31378789
Alignment:
Q  163 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 262  Q
    |||| |||||||||||| |  | |||| | |||||||| ||||| |||||||  ||||||| || ||||| || ||| |||| |||||| ||||||||||    
T  31378676 caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt 31378775  T
Q  263 gttgaaggtaattc 276  Q
    ||| ||| ||||||    
T  31378776 gttcaagataattc 31378789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 31329924 - 31330007
Alignment:
Q  193 cagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattc 276  Q
    |||||||| ||||| |||||||  ||||||| || ||||| || ||| |||| |||||| ||||||||||||| ||| ||||||    
T  31329924 cagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattc 31330007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 31483655 - 31483760
Alignment:
Q  171 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaagg 270  Q
    |||||||||||  | ||||||||| |  |||||||| | || | ||| |||||||||||||| || || ||| ||| |||||| |||| ||||||||||     
T  31483655 tggagatttgtgtgttttgtttcatccattattggactactcttttacgctctaagctcttccttcaatcatatatgtggaaagtggagtttgttgaaga 31483754  T
Q  271 taattc 276  Q
    ||||||    
T  31483755 taattc 31483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 31460440 - 31460376
Alignment:
Q  208 tgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggta 272  Q
    |||||||||||||||| |||||||| || || ||||||||||| || ||||| || || ||||||    
T  31460440 tgctttgttatgctcttagctcttccttcaatcatctatttgggaactggaacttttttaaggta 31460376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 25708394 - 25708482
Alignment:
Q  150 tggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaa 238  Q
    |||||| || ||| |||||| |||||||||||| | |||| ||||||| || ||||| |  | ||||||||||| |||||||| |||||    
T  25708394 tggctgatgcaggaaaaagtatggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaa 25708482  T

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