View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_11 (Length: 720)
Name: NF1343_low_11
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 102 - 710
Target Start/End: Original strand, 44973584 - 44974189
Alignment:
| Q |
102 |
caaaaggctcacggactatatatataagtgctgattgcttgtaatacagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaag |
201 |
Q |
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| T |
44973584 |
caaaaggctcacggactatata----agtgctgattgcttgtaatacagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaag |
44973679 |
T |
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| Q |
202 |
gtacaaaacatttttaattattcctttatttttgtctctctttatcatccacaccaacgttatacattcc-aacgcatggaaacacaaacactcattgtt |
300 |
Q |
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| T |
44973680 |
gtacaaaacatttttaattattcctttatttttgtctctctttatcatccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgtt |
44973779 |
T |
|
| Q |
301 |
ccatcccaccaaaaccttaatttcactccaacttctctcccttagctatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaac |
400 |
Q |
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| T |
44973780 |
ccatcccaccaaaaccttaatttcactccaacttctctcccttagctatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaac |
44973879 |
T |
|
| Q |
401 |
ttcaatctcttactccaaaaacctacaaacaaacaactccatcattgcaccatttctcttcttcaaacattgtacaccaannnnnnnaaactacatcctc |
500 |
Q |
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| T |
44973880 |
ttcaatctcttactccaaaaacctacaaacaaacaacaccatcattgcaccatttctcttcttcaaacattgtacaccaacccccccaaactacatcctc |
44973979 |
T |
|
| Q |
501 |
aaagatgtttccctcacagcatacccttctgagattcttgccattgttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaa |
600 |
Q |
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| T |
44973980 |
aaagatgtttccctcacagcatacccttctgagattcttgccattgttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaa |
44974079 |
T |
|
| Q |
601 |
gattacccttaagtggtacactttcccttaactcttcacctatcactaacccttccacattcagaaaactctctgcttatgttcctcaacatgatgcatg |
700 |
Q |
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| T |
44974080 |
gattacccttaagtggtacactttctcttaactcttcacctatcactaacccttctacattcagaaaactctctgcttatgttcctcaacatgatgcatg |
44974179 |
T |
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| Q |
701 |
tcttcctatg |
710 |
Q |
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|||||||||| |
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| T |
44974180 |
tcttcctatg |
44974189 |
T |
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