View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_112 (Length: 348)
Name: NF1343_low_112
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_112 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 32686858 - 32686561
Alignment:
| Q |
12 |
caatatcatcctcaagtttaaactcttttcccgcttcttccttacaattcttcaccttatcaatcaccgatccctcaaaatccaatccctgagaatcaaa |
111 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
32686858 |
caatatcatcctcaagtttaaattctttccctgcttcttccttacaattcttcaccttatcaatcaccgatccgtcaaaatccaatccctgagaaccaaa |
32686759 |
T |
|
| Q |
112 |
aggagtgtgagtcaaatcagggtacttatcatcatcatagtaaccaccatgttcatcttcttgatcttgttcatccacaacttgtgtttcacttggattt |
211 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32686758 |
agga---------------------ttatcatcatcatagtaaccaccatgtccatcttcttgatcttgttcatccacaacttgtgtttcacttggattt |
32686680 |
T |
|
| Q |
212 |
cgcaacgcctcataagtgtgagcattgttgtaatacacaaccatggctctattatgatcatcataattgccaccttctttggagtgatgatgagaatgac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32686679 |
cgcaacgcctcataagtgtgagcattgttgtaatacacaaccatggctctattatgatcatcataattgccaccttctttggagtgatgatgagaatgac |
32686580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 32679868 - 32679575
Alignment:
| Q |
12 |
caatatcatcctcaagtttaaactcttttcccgcttcttccttacaattcttcaccttatcaatcaccgatccctcaaaatccaatccctgagaatcaaa |
111 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||| || || |||||||||||||| | | ||||||| |
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| T |
32679868 |
caatatcatcctcaagtttaaactctttccctgcttcttccttgcaaatcttcaccttatcaatcactgagccatcaaaatccaatccttcaaaatcaaa |
32679769 |
T |
|
| Q |
112 |
aggagtgtgagtcaaatcagggtactt---atcatcat---------catagtaaccaccatgttcatcttcttgatc---ttgttcatccacaacttgt |
196 |
Q |
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| T |
32679768 |
aagagtgtgagtcaagtcagggtacttgccatcatcatctccataaccatagtaactatcatatccatctccttggtcttgttgttcatccacaacttgt |
32679669 |
T |
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| Q |
197 |
gtttcacttggatttcgcaacgcctcataagtgtgagcattgttgtaatacacaaccatggctctattatgatcatcataattgccaccttctt |
290 |
Q |
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||||||||||||||||||||||| |||||| ||||| | ||||||| ||||||||| | |||| |||| ||||||||| ||||||||||||||| |
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| T |
32679668 |
gtttcacttggatttcgcaacgcttcataactgtgacctttgttgttatacacaactagggctttattgtgatcatcaaaattgccaccttctt |
32679575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 32695958 - 32695821
Alignment:
| Q |
12 |
caatatcatcctcaagtttaaactcttttcccgcttcttccttacaattcttcaccttatcaatcaccgatccctcaaaatccaatccctgagaatcaaa |
111 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || || ||||||||||||| | ||||||||| |
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| T |
32695958 |
caatatcatcctcaagtttaaattctttccctgcttcttccttacaattcttcaccttatcaatcactgacccagcaaaatccaatccttcagaatcaaa |
32695859 |
T |
|
| Q |
112 |
aggagtgtgagtcaaatcagggtacttatcatcatcat |
149 |
Q |
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| | ||||||||||||||||||||||| |||||||||| |
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| T |
32695858 |
aagtgtgtgagtcaaatcagggtacttgtcatcatcat |
32695821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 32695762 - 32695649
Alignment:
| Q |
178 |
ttgttcatccacaacttgtgtttcacttggatttcgcaacgcctcataagtg------tgagcattgttgtaatacacaaccatggctctattatgatca |
271 |
Q |
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||||||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||| | |||| |||| |||||| |
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| T |
32695762 |
ttgttcatctacaacttgtgtttcacttggattttgcaatgcttcataagtgcgatgatgagcattgttgttatacacaactagggctttattgtgatca |
32695663 |
T |
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| Q |
272 |
tcataattgccacc |
285 |
Q |
| |
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||| |||| ||||| |
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| T |
32695662 |
tcacaatttccacc |
32695649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 32695628 - 32695583
Alignment:
| Q |
285 |
cttctttggagtgatgatgagaatgactcccccaaacagaatgaaa |
330 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
32695628 |
cttctttggagtgacgatgagaatggctcccccaaacagaatgaaa |
32695583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 32679553 - 32679517
Alignment:
| Q |
294 |
agtgatgatgagaatgactcccccaaacagaatgaaa |
330 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
32679553 |
agtgatgatgagaatggctcccccaaacagaatgaaa |
32679517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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