View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_115 (Length: 344)
Name: NF1343_low_115
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1855346 - 1855106
Alignment:
| Q |
1 |
tactactactattcgtacagagacgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaa |
100 |
Q |
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| T |
1855346 |
tactactactattcgtacagagatgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaa |
1855247 |
T |
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| Q |
101 |
tttggaattgtctgtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaact |
200 |
Q |
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| T |
1855246 |
tttggaattgtctgtacaagtgagcataaatttggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaact |
1855147 |
T |
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| Q |
201 |
tttacacctccacaagtgtaattgcagccaggtaggacttg |
241 |
Q |
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| T |
1855146 |
tttacacctccacaggtgtaattgcagcctggtaggacttg |
1855106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1817842 - 1818082
Alignment:
| Q |
1 |
tactactactattcgtacagagacgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaa |
100 |
Q |
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||||||||| ||||| ||| ||| ||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||| ||| | || |||||| |
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| T |
1817842 |
tactactaccattcgaacaaagatgtgagactgaaaatttcatttccacttgaccttggggatttatgtccaggacttcgatacccctaggccgaattaa |
1817941 |
T |
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| Q |
101 |
tttggaattgtctgtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaact |
200 |
Q |
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| T |
1817942 |
ttttgagttgtttacacaggtgagttcaaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaatt |
1818041 |
T |
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| Q |
201 |
tttacacctccacaagtgtaattgcagccaggtaggacttg |
241 |
Q |
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| T |
1818042 |
gttaaatctccacaggtgtaattgcagcctggtaggacttg |
1818082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 1844913 - 1845013
Alignment:
| Q |
141 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcagccaggtaggactt |
240 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| || ||||||||||||||||||| |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtatagttgcagccaggtaggactt |
1845012 |
T |
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| Q |
241 |
g |
241 |
Q |
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| T |
1845013 |
g |
1845013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 37566845 - 37566744
Alignment:
| Q |
29 |
gacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcata |
128 |
Q |
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|||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||| ||||| || |
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| T |
37566845 |
gacgaaaaatttcatttccatttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagctta |
37566746 |
T |
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| Q |
129 |
aa |
130 |
Q |
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|| |
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| T |
37566745 |
aa |
37566744 |
T |
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