View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_12 (Length: 719)
Name: NF1343_low_12
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 95 - 507
Target Start/End: Original strand, 1091539 - 1091951
Alignment:
| Q |
95 |
ataaaggacttacatttccaagtaacaaccataatcttgttgggcatgtaagtaaacacaaacaactttatattcccttaatgaaataatatatgacaac |
194 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091539 |
ataaaggacttacatttccaagcaacaaccataatcttgttgggcatgtaagtaaacacaaacaactttatattcccttaatgaaataatatatgacaac |
1091638 |
T |
|
| Q |
195 |
tatttttatttttgtaggcttggaggttatggaaagagggaaattcagaagaattgattgatgattgtctaagggactcatatattccatctgaagcttt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091639 |
tatttttatttttgtaggcttggaggttatggaaagagggaaattcggaagaattgattgatgattgtctaagggactcatatattccatctgaagcttt |
1091738 |
T |
|
| Q |
295 |
aagatgcatacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgtttta |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
1091739 |
aagatgcatacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacaaatgaatctgtttta |
1091838 |
T |
|
| Q |
395 |
gcccaaccaaaggaacctggtttcataatacaaagggtctctaatgagggagaatctacaacgaagtctttctcaatcaatgaggtcactatttcgttaa |
494 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091839 |
gcccaaccaaaggaacctggtttcataatgcaaagggtctctaatgagggagaatctacaacgaagtctttctcaatcaatgaggtcactatttcgttaa |
1091938 |
T |
|
| Q |
495 |
taggtgctagatg |
507 |
Q |
| |
|
||||||||||||| |
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|
| T |
1091939 |
taggtgctagatg |
1091951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 95 - 507
Target Start/End: Original strand, 1050758 - 1051169
Alignment:
| Q |
95 |
ataaaggacttacatttccaagtaacaaccataatcttgttgggcatgtaagtaaacacaaacaactttatattcccttaatgaaataatatatgacaac |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
1050758 |
ataaaggacttacatttccaagcaacaaccataatcttgttgggcatgtaagtaat-acaaactactttatattcccttaatgaaatggtatatgacaac |
1050856 |
T |
|
| Q |
195 |
tatttttatttttgtaggcttggaggttatggaaagagggaaattcagaagaattgattgatgattgtctaagggactcatatattccatctgaagcttt |
294 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1050857 |
tatttgaatttttgtaggcttggaggttatggaaagagggaaattcagaagaattaattgatgattgtctaaaggactcatatattccatctgaagcttt |
1050956 |
T |
|
| Q |
295 |
aagatgcatacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgtttta |
394 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1050957 |
aagatccatacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgtttta |
1051056 |
T |
|
| Q |
395 |
gcccaaccaaaggaacctggtttcataatacaaagggtctctaatgagggagaatctacaacgaagtctttctcaatcaatgaggtcactatttcgttaa |
494 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
1051057 |
gcccaaccaaaggaacctggtttcataatacaaagggtctttgatgaaggagaatctacaacgaagcctttctcaatcaatgaggttactatttcgttaa |
1051156 |
T |
|
| Q |
495 |
taggtgctagatg |
507 |
Q |
| |
|
||| ||||||||| |
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|
| T |
1051157 |
tagatgctagatg |
1051169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 95 - 507
Target Start/End: Original strand, 1077660 - 1078072
Alignment:
| Q |
95 |
ataaaggacttacatttccaagtaacaaccataatcttgttgggcatgtaagtaaacacaaacaactttatatt--cccttaatgaaataatatatgaca |
192 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||||||| |||| ||||| ||| |
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|
| T |
1077660 |
ataaaggacttacatttcagaacaacaactataatcttgttggacatgtaagtaa-cacaaactactttatattttcccttaattaaatggtatataaca |
1077758 |
T |
|
| Q |
193 |
actatttttatttttgtaggcttggaggttatggaaagagggaaattcagaagaattgattgatgattgtctaagggactcatatattccatctgaagct |
292 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1077759 |
actatttgaatttt-gtaggcttggaggttatggaaagagggaaattcaaaagaattgattgatgattgtctaaaggactcatatattccatctgaagct |
1077857 |
T |
|
| Q |
293 |
ttaagatgcatacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttt |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1077858 |
ttaagatgcatacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttt |
1077957 |
T |
|
| Q |
393 |
tagcccaaccaaaggaacctggtttcataatacaaagggtctctaatgagggagaatctacaacgaagtctttctcaatcaatgaggtcactatttcgtt |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| | |
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|
| T |
1077958 |
tagcccaaccaaaggaacctggtttcataatacaaagggtctctaatgagggagaatctacaacgaagcctttctcaatgaatgaggttactatttcggt |
1078057 |
T |
|
| Q |
493 |
aataggtgctagatg |
507 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
1078058 |
aatagatgctagatg |
1078072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 201 - 457
Target Start/End: Original strand, 1108007 - 1108263
Alignment:
| Q |
201 |
tatttttgtaggcttggaggttatggaaagagggaaattcagaagaattgattgatgattgtctaagggactcatatattccatctgaagctttaagatg |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||||| | |||||||||| |||| ||||||||||||| | || |
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|
| T |
1108007 |
tatttttgtaggcttggaggttgtggaaagaaggaaactcaaaagaattgattgaggattgtttcggggactcatacattctatctgaagctttacgttg |
1108106 |
T |
|
| Q |
301 |
catacaagttggtcttttatgtctacaacttcatccaaatgatagaccaaatatgacatatgtgcttgcgatgttgacgaatgaaagtgttttagcccaa |
400 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| || || |||||| | ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
1108107 |
catacaagttggtcttttatgtctacaacatcatccaaatgacaggcctaatatggtttcagtgcttgcgatgttgacgaatgaaactgttttagctcaa |
1108206 |
T |
|
| Q |
401 |
ccaaaggaacctggtttcataatacaaagggtctctaatgagggagaatctacaacg |
457 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
1108207 |
ccaaaggaacctggtttcgtaatacaaatggtctctactgaaagagaatctacaacg |
1108263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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