View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_120 (Length: 334)

Name: NF1343_low_120
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_120
NF1343_low_120
[»] chr4 (1 HSPs)
chr4 (14-308)||(50355368-50355662)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 50355662 - 50355368
Alignment:
Q  14 agagacgaaaaattcaagctgagaaggcagctagggaggccgaggtttgaacgtgactcctctgatcatcttagttttaggaattaaagtttgtagtata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50355662 agagacgaaaaattcaagctgagaaggcagctagggaggccgaggtttgaacgtgactcctctgatcatcttagttttaggaattaaagtttgtagtata 50355563  T
Q  114 acattgggatgcaatgcaacatacaagttctagacaacgatgttaataaatgagctctcacattgtgtttatgtaggaagcagccattaagaagatactt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50355562 acattgggatgcaatgcaacatacaagttctagacaacgatgttaataaatgagctctcacattgtgtttatgtaggaagcagccattaagaagatactt 50355463  T
Q  214 ggtcaagatcctgctaggaagaagaaagaggaaaagatgaataagcacagggatgaaatagccaaggtcttgatacagtttacaaccaaccttct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50355462 ggtcaagatcctgctaggaagaagaaagaggaaaagatgaataagcacagggatgaaatagccaaggtcttgatacagtttacgaccaaccttct 50355368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University