View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_122 (Length: 330)
Name: NF1343_low_122
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_122 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 2023625 - 2023330
Alignment:
| Q |
29 |
agtaaatactacaaa-gttattttaattatattgcatacatgttaagccacctttattgtgtgtatcagaaatttcaaatcttgaaatatggcaaaggag |
127 |
Q |
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| T |
2023625 |
agtaaatactacaaaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggag |
2023526 |
T |
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| Q |
128 |
aagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatacaatggaggcttatcttctgatactaattcctttat |
227 |
Q |
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| T |
2023525 |
aagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttat |
2023426 |
T |
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| Q |
228 |
aggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctctgctc |
323 |
Q |
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| T |
2023425 |
aggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
2023330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 37 - 323
Target Start/End: Original strand, 1959709 - 1959995
Alignment:
| Q |
37 |
ctacaaagttattttaattatattgcatacatgttaagccacctttattgtgtgtatcagaaatttcaaatcttgaaatatggcaaaggagaagttccat |
136 |
Q |
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| T |
1959709 |
ctacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccat |
1959808 |
T |
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| Q |
137 |
caaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatacaatggaggcttatcttctgatactaattcctttataggaccata |
236 |
Q |
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| T |
1959809 |
caaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccata |
1959908 |
T |
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| Q |
237 |
aagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctctgctc |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1959909 |
aagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
1959995 |
T |
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