View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_123 (Length: 326)

Name: NF1343_low_123
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_123
NF1343_low_123
[»] chr7 (35 HSPs)
chr7 (22-289)||(6072154-6072421)
chr7 (132-210)||(30814148-30814226)
chr7 (109-225)||(36101776-36101893)
chr7 (103-223)||(40979921-40980042)
chr7 (114-224)||(45601643-45601754)
chr7 (115-224)||(40138953-40139063)
chr7 (144-196)||(26332908-26332960)
chr7 (109-224)||(27893562-27893678)
chr7 (132-204)||(31681043-31681115)
chr7 (156-224)||(35922420-35922488)
chr7 (109-204)||(43491495-43491591)
chr7 (130-204)||(15682361-15682435)
chr7 (133-227)||(33103090-33103184)
chr7 (109-190)||(40008430-40008512)
chr7 (144-194)||(46938813-46938863)
chr7 (107-223)||(27648948-27649065)
chr7 (100-204)||(28208318-28208423)
chr7 (132-224)||(28627956-28628048)
chr7 (137-224)||(1569183-1569270)
chr7 (136-223)||(38135240-38135327)
chr7 (109-191)||(48515475-48515558)
chr7 (109-194)||(2885721-2885807)
chr7 (132-222)||(43282000-43282089)
chr7 (132-194)||(44951352-44951414)
chr7 (100-204)||(38607179-38607284)
chr7 (132-216)||(42187616-42187700)
chr7 (130-210)||(2882757-2882837)
chr7 (108-171)||(7273320-7273384)
chr7 (109-204)||(12841274-12841370)
chr7 (156-216)||(21517427-21517487)
chr7 (143-223)||(24598221-24598301)
chr7 (146-194)||(44401164-44401212)
chr7 (132-204)||(45836505-45836577)
chr7 (114-161)||(46355860-46355908)
chr7 (144-224)||(47796187-47796267)
[»] chr2 (27 HSPs)
chr2 (122-224)||(31254455-31254557)
chr2 (132-224)||(8197564-8197656)
chr2 (132-224)||(8202324-8202416)
chr2 (109-224)||(33287588-33287704)
chr2 (146-224)||(19336930-19337008)
chr2 (109-210)||(43573129-43573231)
chr2 (132-224)||(38435119-38435211)
chr2 (114-184)||(17429257-17429328)
chr2 (109-194)||(9531599-9531685)
chr2 (132-205)||(3720438-3720511)
chr2 (143-224)||(26670935-26671016)
chr2 (132-224)||(9556392-9556484)
chr2 (114-225)||(13149498-13149610)
chr2 (135-174)||(20900562-20900601)
chr2 (114-191)||(10516753-10516831)
chr2 (107-204)||(28508865-28508963)
chr2 (147-221)||(37470171-37470245)
chr2 (132-194)||(45543096-45543158)
chr2 (147-224)||(1400495-1400572)
chr2 (100-204)||(3635313-3635418)
chr2 (114-194)||(11992112-11992193)
chr2 (109-193)||(12520061-12520146)
chr2 (130-223)||(38430052-38430145)
chr2 (109-204)||(25834865-25834961)
chr2 (109-204)||(30306219-30306315)
chr2 (132-204)||(39709224-39709296)
chr2 (132-204)||(45367648-45367720)
[»] chr1 (32 HSPs)
chr1 (114-215)||(25715330-25715432)
chr1 (100-224)||(5338880-5339005)
chr1 (109-194)||(28090693-28090779)
chr1 (109-224)||(8796376-8796492)
chr1 (109-216)||(41560404-41560512)
chr1 (132-216)||(39140690-39140774)
chr1 (132-224)||(52532639-52532731)
chr1 (134-204)||(12930336-12930406)
chr1 (114-194)||(21769715-21769796)
chr1 (135-216)||(27520233-27520314)
chr1 (114-194)||(37462880-37462961)
chr1 (132-224)||(3818879-3818971)
chr1 (109-216)||(4707220-4707327)
chr1 (109-204)||(15086109-15086205)
chr1 (109-204)||(25979230-25979326)
chr1 (114-185)||(28533673-28533745)
chr1 (132-224)||(32404549-32404641)
chr1 (109-204)||(38807670-38807766)
chr1 (132-224)||(38869049-38869141)
chr1 (132-224)||(40416538-40416630)
chr1 (132-195)||(27072510-27072573)
chr1 (114-224)||(52561593-52561704)
chr1 (133-223)||(8391940-8392030)
chr1 (109-186)||(44941775-44941853)
chr1 (109-161)||(4029352-4029405)
chr1 (109-173)||(37430419-37430484)
chr1 (114-194)||(50257767-50257848)
chr1 (163-224)||(51812676-51812737)
chr1 (132-196)||(2544788-2544852)
chr1 (118-224)||(29128950-29129058)
chr1 (109-216)||(34444531-34444639)
chr1 (142-222)||(40920562-40920642)
[»] chr6 (10 HSPs)
chr6 (109-224)||(34504-34620)
chr6 (114-223)||(608329-608439)
chr6 (109-194)||(12890772-12890858)
chr6 (114-194)||(30031453-30031534)
chr6 (134-210)||(31818712-31818788)
chr6 (108-210)||(12133900-12134003)
chr6 (132-198)||(7513013-7513079)
chr6 (130-184)||(9109530-9109584)
chr6 (134-186)||(7337220-7337272)
chr6 (132-224)||(8364723-8364815)
[»] chr4 (28 HSPs)
chr4 (109-224)||(55007913-55008029)
chr4 (109-187)||(45209204-45209283)
chr4 (109-224)||(25574991-25575107)
chr4 (114-224)||(26024854-26024965)
chr4 (110-192)||(49686892-49686975)
chr4 (114-223)||(1793630-1793740)
chr4 (109-204)||(28236369-28236465)
chr4 (132-219)||(31339696-31339783)
chr4 (100-186)||(35690476-35690563)
chr4 (132-224)||(26037528-26037620)
chr4 (142-194)||(30480320-30480372)
chr4 (132-224)||(40018212-40018304)
chr4 (109-224)||(45204839-45204954)
chr4 (132-224)||(51421897-51421989)
chr4 (109-184)||(56375497-56375573)
chr4 (109-171)||(31961265-31961328)
chr4 (136-215)||(34379579-34379657)
chr4 (114-224)||(55388215-55388326)
chr4 (115-204)||(7947124-7947214)
chr4 (132-194)||(20601675-20601737)
chr4 (150-216)||(40420255-40420321)
chr4 (132-210)||(56439594-56439672)
chr4 (109-204)||(6957785-6957881)
chr4 (115-210)||(29209180-29209276)
chr4 (133-225)||(31403058-31403150)
chr4 (109-224)||(37488258-37488374)
chr4 (143-219)||(48154881-48154957)
chr4 (132-184)||(50967051-50967103)
[»] chr8 (30 HSPs)
chr8 (132-224)||(16035750-16035842)
chr8 (114-194)||(35914605-35914686)
chr8 (132-224)||(490502-490594)
chr8 (109-224)||(30198265-30198381)
chr8 (109-224)||(42584526-42584641)
chr8 (142-224)||(30783075-30783157)
chr8 (135-224)||(23023392-23023481)
chr8 (132-224)||(21425213-21425305)
chr8 (142-221)||(43904698-43904777)
chr8 (132-220)||(24399812-24399900)
chr8 (109-176)||(35323988-35324056)
chr8 (116-178)||(18741845-18741908)
chr8 (116-178)||(18746809-18746872)
chr8 (149-224)||(30559860-30559935)
chr8 (109-178)||(1928586-1928656)
chr8 (132-174)||(14742861-14742903)
chr8 (130-204)||(29735994-29736068)
chr8 (132-186)||(30689940-30689994)
chr8 (109-162)||(39953263-39953317)
chr8 (133-222)||(2518422-2518511)
chr8 (114-178)||(18473976-18474041)
chr8 (147-216)||(31715995-31716064)
chr8 (175-224)||(35643672-35643721)
chr8 (135-224)||(38391919-38392008)
chr8 (135-224)||(39967525-39967614)
chr8 (114-186)||(45419440-45419513)
chr8 (109-224)||(23492201-23492317)
chr8 (132-196)||(32931155-32931219)
chr8 (109-184)||(36545356-36545432)
chr8 (156-204)||(43013239-43013287)
[»] chr5 (26 HSPs)
chr5 (109-224)||(7678645-7678760)
chr5 (116-224)||(14667938-14668047)
chr5 (109-224)||(7359260-7359375)
chr5 (134-224)||(683726-683816)
chr5 (109-195)||(6788263-6788349)
chr5 (109-224)||(28049-28165)
chr5 (136-224)||(418061-418149)
chr5 (132-224)||(9235214-9235305)
chr5 (135-223)||(14911340-14911428)
chr5 (132-204)||(15252767-15252839)
chr5 (136-220)||(20367064-20367148)
chr5 (132-224)||(27998608-27998700)
chr5 (132-224)||(30588614-30588706)
chr5 (109-194)||(11675727-11675813)
chr5 (109-194)||(18855804-18855890)
chr5 (132-216)||(1275439-1275523)
chr5 (132-224)||(12576883-12576975)
chr5 (132-204)||(20456960-20457032)
chr5 (106-161)||(36551376-36551432)
chr5 (132-204)||(43557856-43557928)
chr5 (132-194)||(26884712-26884774)
chr5 (109-161)||(4653482-4653535)
chr5 (133-194)||(38657040-38657101)
chr5 (108-224)||(38684647-38684764)
chr5 (132-204)||(38685154-38685226)
chr5 (109-224)||(43475406-43475522)
[»] chr3 (25 HSPs)
chr3 (137-224)||(36304133-36304220)
chr3 (114-218)||(32170578-32170683)
chr3 (114-224)||(49042103-49042215)
chr3 (100-194)||(52927838-52927933)
chr3 (109-223)||(53519748-53519863)
chr3 (109-222)||(311308-311422)
chr3 (115-193)||(23534576-23534654)
chr3 (109-186)||(46148233-46148311)
chr3 (109-194)||(48508432-48508518)
chr3 (114-223)||(49841784-49841894)
chr3 (114-194)||(40991628-40991709)
chr3 (137-194)||(54365003-54365060)
chr3 (130-194)||(6780684-6780748)
chr3 (114-224)||(15296074-15296185)
chr3 (114-204)||(38060901-38060992)
chr3 (156-210)||(55384065-55384119)
chr3 (142-195)||(5852337-5852390)
chr3 (114-186)||(30797826-30797899)
chr3 (133-186)||(38850326-38850379)
chr3 (143-204)||(48953453-48953514)
chr3 (109-204)||(5169019-5169115)
chr3 (134-194)||(42510041-42510101)
chr3 (109-176)||(49503567-49503635)
chr3 (133-173)||(49888405-49888445)
chr3 (109-184)||(52139007-52139083)
[»] scaffold0024 (2 HSPs)
scaffold0024 (114-204)||(82905-82996)
scaffold0024 (133-194)||(48140-48201)
[»] scaffold0491 (1 HSPs)
scaffold0491 (116-178)||(3650-3713)
[»] scaffold0050 (1 HSPs)
scaffold0050 (132-192)||(58249-58309)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 6072421 - 6072154
Alignment:
Q  22 aatattccatacatttaaagaattcattaaacaattttgaagctagatttcaaaatattaaacttcccatatgacattaacaactaaaacagcaacaacc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6072421 aatattccatacatttaaagaattcattaaacaattttgaagctagatttcaaaatattaaacttcccatatgacattaacaactacaacagcaacaacc 6072322  T
Q  122 aagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072321 aagtcttactcactaagtgtggtcagctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 6072222  T
Q  222 ttcaaactacacatccgagaaattcaaactaaaatctaaaaacaaccaacactccaaattcaaaagga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072221 ttcaaactacacatccgagaaattcaaactaaaatctaaaaacaaccaacactccaaattcaaaagga 6072154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 30814148 - 30814226
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 210  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||| |||| ||||||| ||||||||||| |||||||||||    
T  30814148 cactaagtggggtcggctacatggatcaaattacgtgataatgttctatcataaaacatatttcgatccaactaattaa 30814226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 36101776 - 36101893
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||  ||||||| |||||| ||||||||||| |||| ||||||| ||||||| ||| ||||| ||    
T  36101776 aacaacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattacgtcataatgttctatcataaaccatattttgatccaactcat 36101875  T
Q  208 taaactctagatctttca 225  Q
    ||| || || ||||||||    
T  36101876 taatctataaatctttca 36101893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 40979921 - 40980042
Alignment:
Q  103 aactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattca 201  Q
    |||||| ||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| ||||||| ||| ||    
T  40979921 aactaatacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatatttggatcca 40980020  T
Q  202 actaattaaactctagatcttt 223  Q
    ||| ||| | ||||| ||||||    
T  40980021 actcattgacctctaaatcttt 40980042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 45601754 - 45601643
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| |||| | ||||||||| | || |||||||| |||||| |||  |||| | |||| ||||||||||||||| ||| ||||| ||||| |    
T  45601754 caacaaccaagccttatcccactaagtgagttcagctacatggatcaaattacaccatagtgttctatcataaatcatattttgatccaactcattaatc 45601655  T
Q  213 tctagatctttc 224  Q
    ||||||||||||    
T  45601654 tctagatctttc 45601643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 40138953 - 40139063
Alignment:
Q  115 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaact 213  Q
    |||| |||||||||| | ||||||||| |||| |||||||| ||||||  ||||||||||||||| |||||  ||||||||| ||  |||  ||||| ||    
T  40138953 aacagccaagtcttatcgcactaagtggggtctgctacatggatcaaatgacgtcataatattctatcatatgtcatatttctatcaaacgcattaatct 40139052  T
Q  214 ctagatctttc 224  Q
    |||||||||||    
T  40139053 ctagatctttc 40139063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 26332908 - 26332960
Alignment:
Q  144 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 196  Q
    ||||||||||| |||||| |||||||||||||||| ||||||| |||||||||    
T  26332908 tcggctacatggatcaaattacgtcataatattctatcataaaccatatttcg 26332960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 27893562 - 27893678
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||  ||||||||||||| |||||| || | |||||| |||| ||||||| ||||||||| | || || ||    
T  27893562 aacaacaacaaccaagccttatcgcactaagtagggtcggctacatgaatcaaattatgccataatgttctatcataaaacatatttcggtccagctcat 27893661  T
Q  208 taaactctagatctttc 224  Q
    ||| ||||| |||||||    
T  27893662 taatctctaaatctttc 27893678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 31681043 - 31681115
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||| |||||| ||||||||| |||||| ||||||  ||||||| ||| |||||    
T  31681043 cactaagtggggtcggctacatggatcaaattacgtcatagtattctatcataagccatatttggatccaact 31681115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 35922488 - 35922420
Alignment:
Q  156 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| || |||||||| |||| ||||||||||||||| ||||||||| ||||| ||||| |||||||    
T  35922488 atcaaattaggtcataatgttctatcataaatcatatttagattcaactcattaacctctaaatctttc 35922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 43491591 - 43491495
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| || ||| ||| ||||| | |||| ||||||||||||||| ||| |||||    
T  43491591 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatgaaattacatcatagtgttctatcataaatcatatttggatccaact 43491495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 15682435 - 15682361
Alignment:
Q  130 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||||| ||| ||||||||| |||||| |||| |||| | |||| ||||||||||||||| ||| |||||    
T  15682435 ctcactaagtggggttggctacatggatcaaagtacgccatagtgttctatcataaatcatatttggatccaact 15682361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 33103184 - 33103090
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttcaaa 227  Q
    |||||||| ||||||||||||| |||||| ||||  ||  | |||| ||||||| |||||| |||||||||| ||||| |||||  |||||||||    
T  33103184 actaagtggggtcggctacatggatcaaattacgctatggtgttctatcataaaccatattccgattcaactcattaatctctaagtctttcaaa 33103090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 40008430 - 40008512
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcat 190  Q
    |||| |||||||||||||||| |||| |||||| |||| |||||||| ||||||| ||| |||||| |||| ||||| |||||    
T  40008430 aacaacaacaaccaagtcttatctcattaagtgaggtcagctacatggatcaaacaacgacataatgttctatcatatatcat 40008512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 46938813 - 46938863
Alignment:
Q  144 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||||||||||||||||| |||||||||||||| | ||||||| |||||||    
T  46938813 tcggctacatgtatcaaattacgtcataatattatatcataaaccatattt 46938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 27649065 - 27648948
Alignment:
Q  107 aaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaacta 205  Q
    |||||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| || | | |||| ||||||| || |||| ||| |||||     
T  27649065 aaaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccacagtgttctatcataaaccaaatttggatccaactc 27648966  T
Q  206 attaaactctagatcttt 223  Q
    ||| | ||||| ||||||    
T  27648965 attgacctctaaatcttt 27648948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 28208318 - 28208423
Alignment:
Q  100 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 198  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| |||    
T  28208318 aacaacaacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggat 28208417  T
Q  199 tcaact 204  Q
     |||||    
T  28208418 ccaact 28208423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 28627956 - 28628048
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||||||  |||||||||||| |||||| |||| |||||| |||| ||||||| || ||||  || ||||| ||||| ||||| |||||||    
T  28627956 cactaagtggagtcggctacatggatcaaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttc 28628048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 1569270 - 1569183
Alignment:
Q  137 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||| ||||| ||||||  |||||| |||| | |||| |||| ||||||| ||||||| ||| ||||| ||||| |||||||||||||    
T  1569270 agtggggtcgactacatcgatcaaattacgccgtaatgttctatcataaaccatattttgatccaactcattaatctctagatctttc 1569183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 38135240 - 38135327
Alignment:
Q  136 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 223  Q
    ||||| |||| |||| ||| |||||| |||| ||||||||||| ||||||  ||||||||| | ||||| ||||| ||||| ||||||    
T  38135240 aagtggggtcagctagatggatcaaattacgccataatattctatcataacccatatttcggtccaactcattaatctctaaatcttt 38135327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 48515558 - 48515475
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcata 191  Q
    |||| ||| |||||||||||| | ||||||||| ||||||||||| | |||||| ||||||||| | | || ||||||||||||    
T  48515558 aacaacaaaaaccaagtcttatcccactaagtggggtcggctacacggatcaaattacgtcatagtgtactatcataaatcata 48515475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 2885721 - 2885807
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||  |||| | |||| ||||||| |||||||    
T  2885721 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccatagtgttctatcataaaccatattt 2885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 43282089 - 43282000
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 222  Q
    ||||||||| ||||||||| ||  |||||| |||| |||| | || ||||||||| ||||||| ||| ||||| ||||| |||||||||||    
T  43282089 cactaagtgaggtcggctagatagatcaaattacgccata-tgttttgtcataaaccatattttgatccaactcattaatctctagatctt 43282000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 44951414 - 44951352
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||||||| | |||||||||||| |||||| ||||||||| | |||| |||||||| ||||||    
T  44951414 cactaagtattgtcggctacatggatcaaattacgtcatagtgttctatcataaataatattt 44951352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 38607284 - 38607179
Alignment:
Q  100 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 198  Q
    |||||| | |||| ||||||||||| |||| | |||||||||  |||||||||||| ||||||| ||| |||| | |||| ||| ||| ||||||| |||    
T  38607284 aacaacaacaacaacaacaaccaagccttaacccactaagtggagtcggctacatggatcaaacgacgccatagtgttctatcaaaaaccatatttggat 38607185  T
Q  199 tcaact 204  Q
     |||||    
T  38607184 ccaact 38607179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 42187700 - 42187616
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcat-aatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    ||||||||| ||||||||||||| |||||| |||| ||| ||| |||| ||||||| || |||| ||| ||||||||||| |||||    
T  42187700 cactaagtggggtcggctacatggatcaaattacgccataaatgttctatcataaacca-atttggatccaactaattaatctcta 42187616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 2882757 - 2882837
Alignment:
Q  130 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 210  Q
    ||||||||||| |||| |||| ||  |||||| |||| |||||| |||| ||||||| ||| ||||||| ||||| |||||    
T  2882757 ctcactaagtgaggtcagctaaatagatcaaattacgccataatgttctatcataaaccatgtttcgatccaactcattaa 2882837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 7273384 - 7273320
Alignment:
Q  108 aaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcata 171  Q
    ||||| |||||| |||| |||| | ||||||||| ||||||||||||| |||||| |||||||||    
T  7273384 aaacaacaacaatcaagccttatcccactaagtggggtcggctacatggatcaaattacgtcata 7273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 12841274 - 12841370
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  12841274 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatacaact 12841370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 21517427 - 21517487
Alignment:
Q  156 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    |||||| ||||||||||| || | ||||||||||||||| ||| ||||| ||||| |||||    
T  21517427 atcaaattacgtcataatgttatatcataaatcatatttggatccaacttattaatctcta 21517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 24598221 - 24598301
Alignment:
Q  143 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 223  Q
    |||||||||||| ||||||  | | || |||||||| ||| ||||||||||| ||||||||| ||| | ||||| ||||||    
T  24598221 gtcggctacatggatcaaatgatgccaaaatattctatcaaaaatcatatttggattcaactcattgacctctaaatcttt 24598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 44401164 - 44401212
Alignment:
Q  146 ggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||| |||||| ||||||||||| |||| ||||||| |||||||    
T  44401164 ggctacatggatcaaattacgtcataatgttctatcataaaacatattt 44401212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 45836505 - 45836577
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  45836505 cactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggatccaact 45836577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 46355860 - 46355908
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 161  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
T  46355860 caacaaccaagccttatctcactaagtggggtcggctacatggatcaaa 46355908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 47796187 - 47796267
Alignment:
Q  144 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| |||| |||||| |||| ||||||||||| ||||||| ||||||||  | ||||| |||||  |||| |||||||    
T  47796187 tcggctgcatggatcaaattacgccataatattctatcataaaccatatttcagtccaacttattaatttctaaatctttc 47796267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 31254557 - 31254455
Alignment:
Q  122 aagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 221  Q
    ||||||||  ||||||||  ||||| ||||||||| ||||||  | |||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  31254557 aagtcttatccactaagttgggtcgactacatgtaccaaactgtgccataatgttctgtcataaatcatatttctattcaactcattaatctctagatct 31254458  T
Q  222 ttc 224  Q
    |||    
T  31254457 ttc 31254455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 8197564 - 8197656
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||  ||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||| || ||||||||||    
T  8197564 cactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttc 8197656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 8202324 - 8202416
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||  ||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||| || ||||||||||    
T  8202324 cactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttc 8202416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 33287704 - 33287588
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| |||||||||||||||  | |||||||||  || ||||||| | ||||||||| |||||||| |||| ||||||| |||||||||||  |||| ||    
T  33287704 aacaacaacaaccaagtcttgtcccactaagtggagttggctacaaggatcaaactatgtcataatgttctatcataaaccatatttcgatctaactcat 33287605  T
Q  208 taaactctagatctttc 224  Q
    |||  ||||||||||||    
T  33287604 taatttctagatctttc 33287588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 19336930 - 19337008
Alignment:
Q  146 ggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| |||||| |||| |||||| |||| ||||||| ||||||||||| ||||| ||||| ||||| |||||||    
T  19336930 ggctacatggatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttc 19337008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 43573129 - 43573231
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||  |||  ||||||||||||||| ||| ||||| ||    
T  43573129 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataacgttcgatcataaatcatatttggatccaactcat 43573228  T
Q  208 taa 210  Q
    |||    
T  43573229 taa 43573231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 38435211 - 38435119
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| | ||||||||||| |||||| |||| |||||| |||  ||||||| || |||||||| ||||  ||||| |||||||||||||    
T  38435211 cactaagtgggatcggctacatggatcaaattacgccataatgttcaatcataaaccaaatttcgatccaacacattaatctctagatctttc 38435119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 17429328 - 17429257
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 184  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| |||||| || |||||||| |||| |||||    
T  17429328 caacaaccaagccttatctcactaagtggggtcggctacatgaatcaaattatgtcataatgttctatcata 17429257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 9531599 - 9531685
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||  ||||||| |||||||    
T  9531599 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttccatcataaaccatattt 9531685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 3720438 - 3720511
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaacta 205  Q
    ||||||||| ||||||||||||| |||||| |||  |||||| |||| ||||||| ||| ||||||| ||||||    
T  3720438 cactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaaccatttttcgatccaacta 3720511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 26671016 - 26670935
Alignment:
Q  143 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||||||||| |||||| |||  ||| ||||||| ||||||||||||||| | | ||||| ||||| ||||| |||||||    
T  26671016 gtcggctacatggatcaaattacaccattatattctatcataaatcatattttggtccaactcattaatctctaaatctttc 26670935  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 9556392 - 9556484
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||||||  ||||||||||||||||||| |||  | |||| |||| ||||||| ||||| | ||| ||||| ||||| | |||||||||||    
T  9556392 cactaagtggagtcggctacatgtatcaaattacaccctaatgttctatcataaaccatatcttgatccaactcattaatcactagatctttc 9556484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 13149610 - 13149498
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    |||||||||||||||| |||| ||| || | ||||||| ||| |||||| || |||||||| |||| |||| ||  |||||| ||||| ||| ||||| |    
T  13149610 caacaaccaagtcttatctcattaattgagatcggctatatggatcaaattatgtcataatgttctatcatcaacgatatttggattctactcattaacc 13149511  T
Q  213 tctagatctttca 225  Q
    |||| ||||||||    
T  13149510 tctaaatctttca 13149498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 20900601 - 20900562
Alignment:
Q  135 taagtgtggtcggctacatgtatcaaactacgtcataata 174  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  20900601 taagtgaggtcggctacatggatcaaactacgtcataata 20900562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 10516753 - 10516831
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcata 191  Q
    ||||||||||| |||| | ||||||||| | || |||||||| |||||| |||| ||||||||| | ||||||||||||    
T  10516753 caacaaccaagccttatcccactaagtgagatcagctacatggatcaaattacgccataatattttatcataaatcata 10516831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 28508963 - 28508865
Alignment:
Q  107 aaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  28508963 aaaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatccaact 28508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 37470171 - 37470245
Alignment:
Q  147 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 221  Q
    |||||||| ||||||||||  |||||| |||| |||||   ||||||||||| ||||| ||||| ||||||||||    
T  37470171 gctacatggatcaaactacaccataatgttctatcatatgccatatttcgatccaactcattaatctctagatct 37470245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 45543096 - 45543158
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||| ||||||||||||  |||||| |||| |||||| |||| ||||||| |||||||    
T  45543096 cactaagtggggtcggctacatagatcaaagtacgccataatgttctatcataaaccatattt 45543158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 1400495 - 1400572
Alignment:
Q  147 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||||  |||||| |||| ||||||||| | || |||||||||||| ||||||||| |||||  |||| |||||||    
T  1400495 gctacattgatcaaattacgccataatattttatcgtaaatcatatttagattcaactcattaacttctaaatctttc 1400572  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 3635313 - 3635418
Alignment:
Q  100 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 198  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| |||    
T  3635313 aacaacaacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggat 3635412  T
Q  199 tcaact 204  Q
     |||||    
T  3635413 ccaact 3635418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 11992112 - 11992193
Alignment:
Q  114 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||||| |||| || |||||||| |||| |||||||| ||||||  ||| |||||| |||| ||| |||||||||||    
T  11992112 caacaaccaagccttattccactaagtggggtcagctacatggatcaaataacgccataatgttctatcaaaaatcatattt 11992193  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 12520061 - 12520146
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatt 193  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | || | ||||||| ||||||    
T  12520061 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttttatcataaaccatatt 12520146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 38430145 - 38430052
Alignment:
Q  130 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 223  Q
    ||||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| ||| ||||| ||| | ||||| ||||||    
T  38430145 ctcactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggatccaactcattgacctctaaatcttt 38430052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 25834961 - 25834865
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| || | | |||| ||||||| ||||||| ||| |||||    
T  25834961 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccacagtgttctatcataaaccatatttggatccaact 25834865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 30306315 - 30306219
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  30306315 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatccaact 30306219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 39709224 - 39709296
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||| |||||| |||| |||| | |||  ||||||| ||||||| ||| |||||    
T  39709224 cactaagtggggtcggctacatggatcaaattacgccatagtgttcaatcataaaccatattttgatccaact 39709296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 45367648 - 45367720
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||| ||||| ||||||  |||||||| | |||| ||| ||||||||||| ||| |||||    
T  45367648 cactaagtggggtcggcgacatggatcaaatgacgtcatagtgttctatcaaaaatcatatttggatccaact 45367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 25715330 - 25715432
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||| ||||| |    
T  25715330 caacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccataatattctatcataaaccatatttcggttcaactcattaatc 25715429  T
Q  213 tct 215  Q
    |||    
T  25715430 tct 25715432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 5339005 - 5338880
Alignment:
Q  100 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 198  Q
    |||||| | |||| |||||||| || |||| ||||||||||| ||| ||||||||| |||||| |||| |||||| |||| | |||||||| ||||||||    
T  5339005 aacaacaacaacaacaacaaccgagccttatctcactaagtgaggttggctacatggatcaaattacgccataatgttctataataaatcacatttcgat 5338906  T
Q  199 tcaactaattaaactctagatctttc 224  Q
     ||||| ||||| |||||||||||||    
T  5338905 ccaactcattaatctctagatctttc 5338880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 28090693 - 28090779
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| |||||||    
T  28090693 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatattt 28090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 8796492 - 8796376
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| || ||| |||| |||||| |||| ||||||| |||||||| || ||| | ||    
T  8796492 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggattaaattacgccataatgttctatcataaaccatatttcaatccaagtcat 8796393  T
Q  208 taaactctagatctttc 224  Q
    |||  ||||||||||||    
T  8796392 taatatctagatctttc 8796376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 41560512 - 41560404
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||  ||||||| ||| ||||| ||    
T  41560512 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataacccatatttggatccaactcat 41560413  T
Q  208 taaactcta 216  Q
    ||| |||||    
T  41560412 taatctcta 41560404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 39140774 - 39140690
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||  ||| ||||||| ||| ||||||||||| |||||    
T  39140774 cactaagtggggtcggctacatgaatcaaattacgccataatgttctatctgaaaccatatttggatccaactaattaacctcta 39140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 52532639 - 52532731
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| | | ||||| |||||  |||| |||||||    
T  52532639 cactaagtggggtcggctacatgaatcaaattacgccataatgttctatcataaaccatattttgttccaactcattaatttctaaatctttc 52532731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 12930336 - 12930406
Alignment:
Q  134 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||| ||| ||||||| | |||||| ||||||||||| |||| ||||||||||||||| ||| |||||    
T  12930336 ctaagtggggttggctacacggatcaaattacgtcataatcttctatcataaatcatatttggatccaact 12930406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 21769715 - 21769796
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||| ||| |||||||    
T  21769715 caacaaccaagccttatcacactaagtggggtcggctacatggatcaaattacgccataatgttctatcacaaaccatattt 21769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 27520233 - 27520314
Alignment:
Q  135 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    |||||| ||||| ||||||| |||||| ||| ||||||| |||| ||||||||||||||| ||| || || ||||| |||||    
T  27520233 taagtgaggtcgactacatgaatcaaattacatcataatgttctatcataaatcatatttggatccagctcattaatctcta 27520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 37462880 - 37462961
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| | ||||| |||||||    
T  37462880 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatgataaaccatattt 37462961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 3818879 - 3818971
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||||||  |||||||||||| ||||||   || |||||| |||  ||||||| |||||||| |||||||| ||||| ||||| |||||||    
T  3818879 cactaagtgcagtcggctacatggatcaaatggcgacataatgttccatcataaaccatatttctattcaactcattaatctctaaatctttc 3818971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 4707220 - 4707327
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| || |||| ||| ||||| ||    
T  4707220 aacaacaacaaccaagccttatcccactaagtggggtcggctacatg-atcaaattacgccatagtgttctatcataaaccaaatttggatccaactcat 4707318  T
Q  208 taaactcta 216  Q
    ||| |||||    
T  4707319 taacctcta 4707327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 15086205 - 15086109
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||| ||||||||| ||||||  |||||||| | |||| ||| ||||||||||| ||| |||||    
T  15086205 aacaacaacaaccaagccttatcccactaagtggggttggctacatggatcaaatgacgtcatagtgttctatcaaaaatcatatttggatccaact 15086109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 25979230 - 25979326
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  25979230 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggatccaact 25979326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 28533745 - 28533673
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataa 185  Q
    |||||||||||||||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| ||||||    
T  28533745 caacaaccaagtcttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataa 28533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 32404549 - 32404641
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| |||||| |||| ||| || || | ||||||| ||| ||| |||| |||| ||||| ||||| |||||||    
T  32404549 cactaagtggggtcggctacatggatcaaattacgccattatgttatatcataaaccatgtttggatttaactcattaatctctaaatctttc 32404641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 38807670 - 38807766
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| | |||| |||| |||| | |||| ||||||| ||||||| ||| |||||    
T  38807670 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggaacaaattacgccatagtgttctatcataaaccatatttggatccaact 38807766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 38869141 - 38869049
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| ||||||| ||| |||||| |||| ||||| | ||||| || || ||||  ||||| | |||||||||||    
T  38869141 cactaagtggggtcggctacatggatcaaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttc 38869049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 40416630 - 40416538
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||| | | |||| | |||  |||||| |||| ||||||| ||||||||||| ||||| ||||| || ||||||||||    
T  40416630 cactaagtggggtcggctaaagggatcacattacaccataatgttctatcataaaccatatttcgatccaactcattaatctatagatctttc 40416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 27072510 - 27072573
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 195  Q
    |||||||  |||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||||    
T  27072510 cactaagcatggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttc 27072573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 52561593 - 52561704
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| | || |||||| ||||  |  ||| ||||||| ||| ||||| ||||| |    
T  52561593 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaatttcgccataatgttctacccgaaaccatatttggatccaactcattaacc 52561692  T
Q  213 tctagatctttc 224  Q
    |||| |||||||    
T  52561693 tctaaatctttc 52561704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 8392030 - 8391940
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 223  Q
    |||||||| ||| ||||||||| ||||||  ||| |||| |||||| ||| ||||||||||| ||| ||||| ||| | ||||| ||||||    
T  8392030 actaagtggggttggctacatggatcaaatgacgccatagtattctatcaaaaatcatatttggatccaacttattgacctctaaatcttt 8391940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 44941775 - 44941853
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| |||||||    
T  44941775 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaa 44941853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 4029405 - 4029352
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 161  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||    
T  4029405 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaa 4029352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 37430419 - 37430484
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataat 173  Q
    |||| ||||||||||| |||| ||||||||||| | ||||||| ||| ||||||||||| ||||||    
T  37430419 aacaacaacaaccaagccttatctcactaagtgggatcggctatatggatcaaactacgccataat 37430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 50257848 - 50257767
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||| ||| |||| ||||||||||| ||| ||||||||| |||||| |||  |||||| |||| ||||||| |||||||    
T  50257848 caacaacgaagccttatctcactaagtggggttggctacatggatcaaattacaccataatgttctatcataaaccatattt 50257767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 51812737 - 51812676
Alignment:
Q  163 tacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||| ||||||||||| ||||||| |||||||||||  |||| |||||  ||||||||||||    
T  51812737 tacggcataatattctatcataaaccatatttcgatctaactcattaacatctagatctttc 51812676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 2544852 - 2544788
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 196  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| | ||||| |||||||||    
T  2544852 cactaagtggggtcggctacatggatcaaattatgccataatgttctattataaaccatatttcg 2544788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 29129058 - 29128950
Alignment:
Q  118 aaccaagtctta-ctcactaagtgtggtcggctacat-gtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactct 215  Q
    ||||||| |||| ||||||||||| |||||||||||| | |||| | |||  |||||| |||| ||||||| ||||||| ||| |||||  |||| ||||    
T  29129058 aaccaagccttatctcactaagtggggtcggctacatgggatcatattacaccataatgttctatcataaaccatatttggatccaacttgttaacctct 29128959  T
Q  216 agatctttc 224  Q
    | |||||||    
T  29128958 aaatctttc 29128950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 34444639 - 34444531
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||  |||||| |||  |||||| || | | ||||| ||||||| ||| ||||| ||    
T  34444639 aacaacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaattacaccataatgttttattataaaccatatttggatccaactcat 34444540  T
Q  208 taaactcta 216  Q
    ||| |||||    
T  34444539 taatctcta 34444531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 40920562 - 40920642
Alignment:
Q  142 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 222  Q
    ||||| ||||||| ||||||  ||  ||||||||||| ||||| | |||||||| || ||||| ||||| |||||||||||    
T  40920562 ggtcgactacatgaatcaaaagacaccataatattctatcatataccatatttctatccaactcattaatctctagatctt 40920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 34504 - 34620
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| |||||||||||||||| | ||||||||| |||| |||||||| |||||| |||| |||||| |||| ||||||| |||||||| || ||||| ||    
T  34504 aacaacaacaaccaagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaactcat 34603  T
Q  208 taaactctagatctttc 224  Q
    ||| || ||||||||||    
T  34604 taatctttagatctttc 34620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 608439 - 608329
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    |||||||||||||||| | ||||||||  ||||||||||||| ||||||  |||||||| |||||| ||| ||| ||||||| ||| ||||| ||| |||    
T  608439 caacaaccaagtcttatcccactaagtagggtcggctacatggatcaaatgacgtcatagtattctatcaaaaaccatatttggatccaactcattgaac 608340  T
Q  213 tctagatcttt 223  Q
    |||| ||||||    
T  608339 tctaaatcttt 608329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 12890858 - 12890772
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  12890858 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 12890772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 30031534 - 30031453
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  30031534 caacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 30031453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 31818788 - 31818712
Alignment:
Q  134 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 210  Q
    ||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| |||| || ||| ||||| |||||    
T  31818788 ctaagtggggtcggctacatggatcaaattacgacataatgttctatcataaaccatactttgatccaactcattaa 31818712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 12133900 - 12134003
Alignment:
Q  108 aaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaa 206  Q
    ||||| ||||||||||| |||  ||||||||||| ||||||||||||| |||| | || | |||||| |||| | || ||||| |||||||| ||||| |    
T  12133900 aaacaacaacaaccaagccttttctcactaagtggggtcggctacatggatcagattatgccataatgttctattatgaatcacatttcgatccaactca 12133999  T
Q  207 ttaa 210  Q
    ||||    
T  12134000 ttaa 12134003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 7513013 - 7513079
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 198  Q
    ||||||||| ||||  ||||||  |||||| ||||||||||| |||| ||||||| |||||||||||    
T  7513013 cactaagtggggtcaactacatagatcaaattacgtcataatgttctatcataaaccatatttcgat 7513079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 9109530 - 9109584
Alignment:
Q  130 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 184  Q
    |||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||    
T  9109530 ctcactaactggggtcggctacatggatcaaactacttcatagtattctatcata 9109584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 7337220 - 7337272
Alignment:
Q  134 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    ||||||| ||||||||||||| | |||| |||| ||||||||||| |||||||    
T  7337220 ctaagtggggtcggctacatggaccaaattacgccataatattctatcataaa 7337272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 8364815 - 8364723
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||| | ||||||||||||| |||||| |||| |||||| |||| ||||||| ||| ||||  | ||||| |||||  |||| |||||||    
T  8364815 cactaagcggggtcggctacatggatcaaattacgccataatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttc 8364723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 55008029 - 55007913
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||||||||||  ||| ||||||| ||||||||| | ||||| ||    
T  55008029 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgtcataatgatctatcataaaccatatttcggtccaactcat 55007930  T
Q  208 taaactctagatctttc 224  Q
    ||| ||||| |||||||    
T  55007929 taatctctaaatctttc 55007913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 45209204 - 45209283
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaat 187  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45209204 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaactacgccataatattctatcataaat 45209283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 25575107 - 25574991
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | |||||| || |||| |||||||| |||||| |||  || ||| |||| ||||||| ||||||||||| ||||| ||    
T  25575107 aacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaattacaccacaatgttctatcataaaccatatttcgatccaactcat 25575008  T
Q  208 taaactctagatctttc 224  Q
    ||| |||||||||||||    
T  25575007 taatctctagatctttc 25574991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 26024854 - 26024965
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| || ||| |||  |||||| |||| ||||||| ||| | ||||| ||||| ||||| |    
T  26024854 caacaaccaagccttatcccactaagtgaggtcggctacatggataaaattacaccataatgttctatcataaaccatgtctcgatccaactcattaatc 26024953  T
Q  213 tctagatctttc 224  Q
    ||||||||||||    
T  26024954 tctagatctttc 26024965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 49686975 - 49686892
Alignment:
Q  110 acagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatat 192  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||  |||||| ||| ||||||||||  ||||| |||||||    
T  49686975 acagcaacaaccaagtcttatcccactaagtggggtcggctacatggttcaaacgacgccataatattccatcatatatcatat 49686892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 1793740 - 1793630
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||| ||| |||| ||||||||||| | ||||||||||| |||||| ||||||||| |  ||| ||||||||||||||| ||| ||||| ||| | |    
T  1793740 caacaactaagccttatctcactaagtgagatcggctacatgaatcaaattacgtcatagtgctctatcataaatcatatttggatccaactcattgacc 1793641  T
Q  213 tctagatcttt 223  Q
    |||| ||||||    
T  1793640 tctaaatcttt 1793630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 28236465 - 28236369
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||  |||||| |||  ||||||||||| ||||||| || |||| ||| |||||    
T  28236465 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatagatcaaattacaccataatattctatcataaaccaaatttggatccaact 28236369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 31339783 - 31339696
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagat 219  Q
    ||||||||| |||||| |||||| | ||||| |||||||||| |||| ||||  | ||||||||||| ||||| ||||| ||||||||    
T  31339783 cactaagtggggtcggatacatggaccaaacgacgtcataatgttctatcatgtaccatatttcgatccaactcattaatctctagat 31339696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 35690563 - 35690476
Alignment:
Q  100 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    |||||| | |||| ||| |||||||||||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||||    
T  35690563 aacaacaacaacaacaaaaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaa 35690476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 26037528 - 26037620
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| ||| || |||| |||| | |||| ||||||| ||||||| ||| ||||| ||| | ||||| |||||||    
T  26037528 cactaagtggggtcggctacatggatccaattacgccatagtgttctatcataaaccatatttggatccaactcattcacctctaaatctttc 26037620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 30480372 - 30480320
Alignment:
Q  142 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||||||| |||||| |||||||||| ||||| ||||||| |||||||    
T  30480372 ggtcggctacatggatcaaattacgtcataaaattctatcataaaccatattt 30480320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 40018212 - 40018304
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| ||||||| ||| | |||| |||| ||||| |||||||  | || ||||| ||| | |||||||||||||    
T  40018212 cactaagtggggtcggctacatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttc 40018304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 45204839 - 45204954
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||  ||| ||||||||  |||||| |||| | |||| |||| ||||||| ||||||| ||| ||||| ||    
T  45204839 aacaacaacaaccaagccttatcccactaagttgggtgggctacatagatcaaattacgcc-taatgttctatcataaaccatatttggatccaacttat 45204937  T
Q  208 taaactctagatctttc 224  Q
    ||||||||| |||||||    
T  45204938 taaactctaaatctttc 45204954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 51421989 - 51421897
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| | | ||||||||| |||||| ||||||||||| |||| ||||||| ||| ||| ||| ||| | ||||| ||||| |||||||    
T  51421989 cactaagtgagattggctacatggatcaaattacgtcataatgttctatcataaaccatttttggatccaattcattaacctctaaatctttc 51421897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 56375573 - 56375497
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 184  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  56375573 aacaacaacaaccaagtcttatcccactaagtgaggtcggctacatggatcaaatgacgtcatagtgttctatcata 56375497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 31961265 - 31961328
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcata 171  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||| ||||||||    
T  31961265 aacaacaacaaccaagccttatcccactaagtgaggtcggctacatgaatcaaacgacgtcata 31961328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 34379657 - 34379579
Alignment:
Q  136 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactct 215  Q
    ||||| ||||||||||||| |||||  |||| ||||||||||| ||||||| ||||||||| | ||||| ||||| ||||    
T  34379657 aagtggggtcggctacatg-atcaagttacgccataatattctatcataaaccatatttcggtccaactcattaatctct 34379579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 55388215 - 55388326
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| |||| | ||||||||| ||||| | ||||| |||||| |||  || ||| |||| |||||||||||||||||||  |||| ||||| |    
T  55388215 caacaaccaagccttatcccactaagtggggtcgacaacatggatcaaattacaccacaatgttctatcataaatcatatttcgatctaactcattaatc 55388314  T
Q  213 tctagatctttc 224  Q
    || | |||||||    
T  55388315 tccaaatctttc 55388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 7947214 - 7947124
Alignment:
Q  115 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||||||||| |||| | ||||||||| ||||||||||||| |||||| ||| | ||| | |||| |||||||||| |||| ||| |||||    
T  7947214 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacatgatagtgttctatcataaatcaaatttggatccaact 7947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 20601675 - 20601737
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||| | || | |||||| |||||| ||||||||||| |||| |||||||||||||||    
T  20601675 cactaagtgggttcagttacatgaatcaaattacgtcataatgttctatcataaatcatattt 20601737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 40420255 - 40420321
Alignment:
Q  150 acatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    |||||||||||| |||||| |||| |||| ||||||| ||||||  ||||||||| ||||| |||||    
T  40420255 acatgtatcaaattacgtcgtaatgttctatcataaaccatattaggattcaactcattaatctcta 40420321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 56439594 - 56439672
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 210  Q
    ||||||||| ||| ||||| ||| || ||| ||||  ||||| |||| ||||||| ||||||||||| |||||||||||    
T  56439594 cactaagtggggttggctatatggattaaattacgctataatgttctatcataaaccatatttcgatccaactaattaa 56439672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 6957881 - 6957785
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| | ||||||||||| ||||||  |||||||| | |||| ||||| |||| |||| ||| |||||    
T  6957881 aacaacaacaaccaagccttatcccactaagtgggatcggctacatggatcaaatgacgtcatagtgttctatcatacatcaaatttggatccaact 6957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 29209180 - 29209276
Alignment:
Q  115 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 210  Q
    ||||||||||||||| | || |||||| ||||||||||||  ||||||| ||| ||||||  ||| ||||| | |||||||| || ||||| |||||    
T  29209180 aacaaccaagtcttatcccattaagtggggtcggctacattgatcaaacaacgccataatgctctatcatataccatatttctatccaactcattaa 29209276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 31403058 - 31403150
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttca 225  Q
    |||||||| ||||| ||||||| ||||| | ||  ||||||  ||| ||||| | || ||||| || ||||||||||| ||||||||||||||    
T  31403058 actaagtggggtcgtctacatggatcaagcaacaccataatgctctatcatataccacatttctatccaactaattaatctctagatctttca 31403150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 37488374 - 37488258
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||  ||||||||| |||||| |||| ||||||  ||| |||| || ||||||| |||  |||| ||    
T  37488374 aacaacaacaaccaagccttatcccactaagtggggctggctacatggatcaaattacgccataatgctctatcattaaccatattttgatcaaacttat 37488275  T
Q  208 taaactctagatctttc 224  Q
    |||  ||||||||||||    
T  37488274 taatttctagatctttc 37488258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 48154881 - 48154957
Alignment:
Q  143 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagat 219  Q
    |||||||||||  ||||||| | | |||||| |||||||||| ||||| |||| || ||||| ||||| ||||||||    
T  48154881 gtcggctacatacatcaaacaatgccataatgttctgtcatatatcatgtttctatccaactcattaatctctagat 48154957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 50967051 - 50967103
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 184  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||    
T  50967051 cactaagtgaggtcggctacatggatcaaattacgacataattttctttcata 50967103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 16035750 - 16035842
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| |||| |||||||| |||||| ||||||||||| ||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||    
T  16035750 cactaagtggggtcagctacatgaatcaaattacgtcataatgttctaccataaaccatatttcgatccaactaagtaatctctagatatttc 16035842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 35914605 - 35914686
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||||||||||||||| ||||||||||| |||| |||||||| |||||| |||| |||||| |||| ||||||| |||||||    
T  35914605 caacaaccaagtcttatctcactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatattt 35914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 490594 - 490502
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||| ||||| || || ||||| |||||||    
T  490594 cactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcatcaatctctaaatctttc 490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 30198265 - 30198381
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||| ||||  ||||||||||  ||||||||||| ||||||| |||||| |||| ||||| ||    
T  30198265 aacaacaacaaccaagccttatcccactaagtggggtcggcaacatagatcaaactacaccataatattctatcataaaccatattccgatccaactcat 30198364  T
Q  208 taaactctagatctttc 224  Q
    ||| ||| | |||||||    
T  30198365 taatctcaatatctttc 30198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 42584641 - 42584526
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| |||||| ||||||||| | ||||||||| ||||||||||| | |||||| ||||||||||| |||| ||||||| ||||||| ||| ||| | ||    
T  42584641 aacaacaacaatcaagtcttatcccactaagtggggtcggctacaag-atcaaattacgtcataatgttctatcataaaccatatttggatccaaatcat 42584543  T
Q  208 taaactctagatctttc 224  Q
    ||| || ||||||||||    
T  42584542 taacctatagatctttc 42584526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 30783075 - 30783157
Alignment:
Q  142 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||||||| |||||||||| ||||||| || | | ||||| | ||||||||| ||||| ||||| |||||||||||||    
T  30783075 ggtcggctacatggatcaaactacctcataatgttttattataaaccgtatttcgatccaactcattaatctctagatctttc 30783157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 23023481 - 23023392
Alignment:
Q  135 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||| ||||| ||||| || | || ||||| ||||| || ||||||||||    
T  23023481 taagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatccaactcattaatctgtagatctttc 23023392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 21425305 - 21425213
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||  |||| |||||||| |||||| || | ||||||  ||| ||||||||||||||||||| ||||| ||||| ||||| |||||||    
T  21425305 cactaagtagggtctgctacatggatcaaattatgccataatggtctatcataaatcatatttcgatccaactcattaatctctatatctttc 21425213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 43904698 - 43904777
Alignment:
Q  142 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 221  Q
    ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||| ||||| ||||| ||||| ||||    
T  43904698 ggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttagatccaactcattaatctctaaatct 43904777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 24399812 - 24399900
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatc 220  Q
    ||||||||||||| ||||||||  | ||||  || |||||||||||| ||||||| |||||||| || ||||| ||||| ||| |||||    
T  24399812 cactaagtgtggttggctacatagaacaaatgacatcataatattctatcataaaccatatttcaatccaactcattaatctcgagatc 24399900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 35324056 - 35323988
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatatt 176  Q
    |||| ||||||||||| |||| | ||||||||| |||||||||| || |||||| ||||||||||||||    
T  35324056 aacaacaacaaccaagccttatcccactaagtggggtcggctacgtggatcaaattacgtcataatatt 35323988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 18741908 - 18741845
Alignment:
Q  116 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 178  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  18741908 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 18741845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 18746872 - 18746809
Alignment:
Q  116 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 178  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  18746872 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 18746809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 30559935 - 30559860
Alignment:
Q  149 tacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| |||||| ||||||||||| |||| ||||||| ||||| | ||| ||||| ||||| ||||| |||||||    
T  30559935 tacatggatcaaattacgtcataatgttctatcataaaccatatatggatccaactcattaatctctaaatctttc 30559860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 1928586 - 1928656
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 178  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| ||||    
T  1928586 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttct 1928656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 14742861 - 14742903
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataata 174  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||    
T  14742861 cactaagtggggttggctacatggatcaaactacgtcataata 14742903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 29736068 - 29735994
Alignment:
Q  130 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||||||||| ||  || ||||||| |||||| ||||||||||  |||  ||||||||||||||| |||||||||    
T  29736068 ctcactaagtatgaccgactacatgaatcaaattacgtcataaagttcaatcataaatcatatttggattcaact 29735994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 30689994 - 30689940
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| || | |||||||    
T  30689994 cactaagtggggtcggctacatggatcaaattacgtcataatgttatatcataaa 30689940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 39953263 - 39953317
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaac 162  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||||    
T  39953263 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatgaatcaaac 39953317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 2518422 - 2518511
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 222  Q
    |||||||| |||| |||||| | |||||| || | |||||| |||| ||| |||||||||||||||  |||| ||||| || ||||||||    
T  2518422 actaagtggggtcagctacaaggatcaaattatgccataatgttctatcagaaatcatatttcgatcaaactgattaatctgtagatctt 2518511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 18473976 - 18474041
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 178  Q
    |||||||||||||||| | |||||||||  |||||||||||| ||||||| | |||||||| ||||    
T  18473976 caacaaccaagtcttatcccactaagtggtgtcggctacatgaatcaaacgaagtcataatgttct 18474041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 31716064 - 31715995
Alignment:
Q  147 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    |||||||| |||||| |||| |||||| |||| || |||| ||||||| ||| ||||||||||| |||||    
T  31716064 gctacatggatcaaattacgccataatgttctatcttaaaccatatttggatccaactaattaatctcta 31715995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 35643672 - 35643721
Alignment:
Q  175 ttctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||| ||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  35643672 ttctatcataaaccatatttcgatccaactcattaatctctagatctttc 35643721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 38391919 - 38392008
Alignment:
Q  135 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| | ||||| ||||| || ||| |||| ||||||||||| ||||| | ||||||||||| | ||| ||||| || ||||||||||    
T  38391919 taagtgggatcggccacatggatgaaattacgccataatattctatcatataccatatttcgatcccactcattaatctgtagatctttc 38392008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 39967525 - 39967614
Alignment:
Q  135 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| | ||||||||||| ||||||||||| |||||| ||||  ||||||  |||| || || ||||| ||||| | |||||||||||    
T  39967525 taagtgggatcggctacatggatcaaactacgccataatgttctaacataaactatatctcaatccaactcattaatcgctagatctttc 39967614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 45419513 - 45419440
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||  |||||| |||| |||||||    
T  45419513 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaa 45419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 23492317 - 23492201
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| |||||| |||| |||| ||||||||||| ||||||||||||| || |||  ||  |||| | |||| ||||| |||||||||| || ||||| ||    
T  23492317 aacaacaacaaacaagccttatctcactaagtggggtcggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatccaactcat 23492218  T
Q  208 taaactctagatctttc 224  Q
    ||| | ||| |||||||    
T  23492217 taatcgctacatctttc 23492201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 32931219 - 32931155
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 196  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| ||||| | |||||||||    
T  32931219 cactaagtggggtcggctacatggatcaaattatgccataatgttctatcatacaccatatttcg 32931155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 36545432 - 36545356
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 184  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  36545432 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcata 36545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 43013239 - 43013287
Alignment:
Q  156 atcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||||| ||||||||||||  || ||||||||||||||||||| |||||    
T  43013239 atcaaattacgtcataataacctatcataaatcatatttcgatccaact 43013287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 7678760 - 7678645
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| |||||||||||| ||| | ||||||||| ||||||||||||| |||||||||| ||||||| || | | ||||| | ||||||||| ||||| ||    
T  7678760 aacaacaacaaccaagttttatcccactaagtggggtcggctacatggatcaaactacctcataatgtt-tattataaaccgtatttcgatccaactcat 7678662  T
Q  208 taaactctagatctttc 224  Q
    ||| |||||||||||||    
T  7678661 taatctctagatctttc 7678645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 14668047 - 14667938
Alignment:
Q  116 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactc 214  Q
    |||||||||||||| | ||||||||| |||||| |||||| |||||| |||  |||||| |||| ||||||| |||| || ||| ||||| ||||| |||    
T  14668047 acaaccaagtcttatcccactaagtggggtcggttacatggatcaaattacaccataatgttctatcataaaccatacttggatccaactcattaatctc 14667948  T
Q  215 tagatctttc 224  Q
    ||||||||||    
T  14667947 tagatctttc 14667938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 7359260 - 7359375
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| |||||||||||||||  | ||||||||| |||| |||||||| |||||| ||||||||||| || | || |||| ||||||||||| ||||| ||    
T  7359260 aacaacaacaaccaagtcttgtcccactaagtggggtcagctacatggatcaaattacgtcataatgtt-tatcgtaaaccatatttcgatccaacttat 7359358  T
Q  208 taaactctagatctttc 224  Q
    ||| |||||||| ||||    
T  7359359 taatctctagatttttc 7359375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 683726 - 683816
Alignment:
Q  134 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||| ||| ||||||||| ||||||||||  |||||| |||| ||||||| ||||||| ||| ||||||||||| || || |||||||    
T  683726 ctaagtggggttggctacatggatcaaactacaacataatgttctatcataaaccatattttgatacaactaattaagctttaaatctttc 683816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 6788349 - 6788263
Alignment:
Q  109 aacagcaacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 195  Q
    |||| |||| |||||||||| |  |||||||| ||||||||||||| |||||| ||||  ||||| |||| ||||||||||||||||    
T  6788349 aacaacaaccaccaagtctttcctactaagtgaggtcggctacatgaatcaaattacgctataatgttctatcataaatcatatttc 6788263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 28165 - 28049
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||| |||||||||||| || ||||| || |||| ||||||||||||||| || | |||| | |||| ||| ||||||||||| ||| ||||| ||    
T  28165 aacaacaaaaaccaagtcttatctaactaaatggggtcagctacatgtatcaaattatgccatagtgttctatcagaaatcatatttggatccaacttat 28066  T
Q  208 taaactctagatctttc 224  Q
    ||| ||||| |||||||    
T  28065 taacctctaaatctttc 28049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 418061 - 418149
Alignment:
Q  136 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| || |||| ||| ||||| ||||| ||||| |||||||    
T  418061 aagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccacatttggatccaactcattaatctctaaatctttc 418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 9235305 - 9235214
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| ||||||| ||||||||||| || || ||||| ||||| |||||||    
T  9235305 cactaagtg-ggtcggctacatggatcaaattatgccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttc 9235214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 14911428 - 14911340
Alignment:
Q  135 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 223  Q
    |||||| ||||||||||||| ||||||  ||| |||| |||||| ||| ||||||||||| ||| ||||| ||||| ||||| ||||||    
T  14911428 taagtggggtcggctacatggatcaaatgacgccatagtattctatcaaaaatcatatttggatccaactcattaacctctaaatcttt 14911340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 15252767 - 15252839
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||| || ||||||| ||||||| |||| ||||||| | ||||||||| |||||    
T  15252767 cactaagtggggtcggctacatgaattaaactacatcataatgttctatcataaaccctatttcgatccaact 15252839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 20367148 - 20367064
Alignment:
Q  136 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatc 220  Q
    ||||| ||| ||||| ||| |||||| ||||||||||| || ||||||||| ||||||| ||| ||||| ||||| |||||||||    
T  20367148 aagtggggttggctatatggatcaaattacgtcataatgttatgtcataaaccatatttggatccaactcattaatctctagatc 20367064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 27998700 - 27998608
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    ||||||||| |||||| |||||| ||||||| ||||||||||||||| ||||| ||||| || | ||  |||| ||||| || ||||||||||    
T  27998700 cactaagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatctaactcattaatctgtagatctttc 27998608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 30588706 - 30588614
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||||||  |||||||||||| |||| |  |||||||||| |||| | ||||| ||||||||||| ||||| ||| | |||||||||||||    
T  30588706 cactaagtggagtcggctacatggatcatatcacgtcataatgttctattataaaccatatttcgatccaactcattcatctctagatctttc 30588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 11675813 - 11675727
Alignment:
Q  109 aacagcaacaaccaagtcttactca-ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| ||||||||||| ||||  || ||||||| ||||||||||||| || |||||||| |||||| |||| ||||||| |||||||    
T  11675813 aacaacaacaaccaagccttatccaactaagtggggtcggctacatggattaaactacgccataatgttctatcataaaccatattt 11675727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 18855890 - 18855804
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||| || |  ||||| |||| ||||||| |||||||    
T  18855890 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattatgctataatgttctatcataaaccatattt 18855804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 1275523 - 1275439
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 216  Q
    ||||||||| ||||||||||||| ||||||  |||||||||| |||| ||| | | || |||| ||||||||| ||||| |||||    
T  1275523 cactaagtggggtcggctacatggatcaaatgacgtcataatgttctatcaaacaccaaatttggattcaactgattaacctcta 1275439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 12576883 - 12576975
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||||| || |||||||||||||||| |||  ||  ||||||  ||| ||||| | |||||||| |||||||| ||||| |||||||||||||    
T  12576883 cactaattggggtcggctacatgtataaaatgacaccataatggtctatcatataccatatttctattcaactcattaatctctagatctttc 12576975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 20457032 - 20456960
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||| ||||||  ||| |||||| |||| ||||| |||| |||| |||||||||    
T  20457032 cactaagtggggtcggctacatggatcaaatgacgccataatgttctatcatacatcaaatttagattcaact 20456960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 36551432 - 36551376
Alignment:
Q  106 taaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 161  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
T  36551432 taaaacaacaacaaccaagccttatctcactaagtggggtcggctacatggatcaaa 36551376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 43557856 - 43557928
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||  |||||  || |||||||| |||| ||||||| ||||||||||| |||||    
T  43557856 cactaagtggggtcggctacatagatcaacttaagtcataatgttctatcataaaccatatttcgatccaact 43557928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 26884712 - 26884774
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||| ||||||||||||| |||||| | |||| || | |||| |||||||||||||||    
T  26884712 cactaagtggggtcggctacatggatcaaattgcgtcgtagtgttctatcataaatcatattt 26884774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 4653535 - 4653482
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 161  Q
    |||| |||||||||||||||| ||||||||||| |||||| |||||| ||||||    
T  4653535 aacaacaacaaccaagtcttatctcactaagtggggtcggatacatgaatcaaa 4653482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 38657101 - 38657040
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||  || ||||||||| ||||||| || ||||||| |||| |||||||||||||||    
T  38657101 actaagtgaagttggctacatgaatcaaacgacatcataatgttctatcataaatcatattt 38657040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 38684764 - 38684647
Alignment:
Q  108 aaacagcaacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaa 206  Q
    ||||| |||||||||||  ||| || |||||||| ||||  ||||||| ||||||  ||| |||||| |||| |||   | |||||||| || |||||||    
T  38684764 aaacaacaacaaccaagctttattccactaagtggggtcaactacatgaatcaaataacgccataatgttctatcaagtaccatatttctatccaactaa 38684665  T
Q  207 ttaaactctagatctttc 224  Q
    |||| |||||||||||||    
T  38684664 ttaatctctagatctttc 38684647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 38685226 - 38685154
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  38685226 cactaagtggggtcggctacatggatcaaatgacgccatattgttctatcataaaccatatttggatccaact 38685154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 43475522 - 43475406
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | || ||||||  || |||||| || |||||| |||  |||||  ||||  |||||||||||||||||| ||||| ||    
T  43475522 aacaacaacaaccaagccttatcccattaagtggagttggctacgtggatcaaattacaccataacgttctaccataaatcatatttcgatccaactcat 43475423  T
Q  208 taaactctagatctttc 224  Q
    ||| |||| ||||||||    
T  43475422 taatctctggatctttc 43475406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 36304220 - 36304133
Alignment:
Q  137 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 224  Q
    |||| ||||||||||||| |||||| |||| |||||| | || ||||||| ||||||| ||| ||||| ||||| |||||||||||||    
T  36304220 agtggggtcggctacatggatcaaattacgccataatgtcctatcataaaccatattttgatccaactcattaatctctagatctttc 36304133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 32170683 - 32170578
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    |||||||||||  ||| ||||||||||| ||||||||||||| |||||| || |||||||| || | ||||| | |||||||| || ||||| ||||| |    
T  32170683 caacaaccaagctttatctcactaagtggggtcggctacatggatcaaattatgtcataatgttatatcatagaccatatttctatccaacttattaatc 32170584  T
Q  213 tctaga 218  Q
    ||||||    
T  32170583 tctaga 32170578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 49042215 - 49042103
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcat-aaatcatatttcgattcaactaattaaa 211  Q
    ||||||||||| |||| ||||| ||||| ||||||||||||| |||||| |||| |||| | |||| |||| ||| ||||||| ||| ||||| |||||     
T  49042215 caacaaccaagccttatctcaccaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaaccatatttggatccaactcattaac 49042116  T
Q  212 ctctagatctttc 224  Q
    ||||| |||||||    
T  49042115 ctctaaatctttc 49042103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 52927838 - 52927933
Alignment:
Q  100 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| || | |||||| ||||||| |||| |||||||    
T  52927838 aacaacaacaacatcaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattatgccataatgttctgtcgtaaaccatattt 52927933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 53519863 - 53519748
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||  |||||||| | |||| ||| ||| | ||||| ||| ||||| ||    
T  53519863 aacaacaacaaccaagccttatctcactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcaaaaaccttatttggatccaactcat 53519764  T
Q  208 taaactctagatcttt 223  Q
    | | ||||| ||||||    
T  53519763 tgacctctaaatcttt 53519748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 311308 - 311422
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 207  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||||||||||  ||| |||| | |||| ||| ||| ||||| | ||| ||||||||    
T  311308 aacaacaacaaccaagccttatcccactaagtggggtcggctacatgtatcaaatgacgccatagtgttctatcaaaaaccatatctggatccaactaat 311407  T
Q  208 taaactctagatctt 222  Q
    | | ||||| |||||    
T  311408 tgacctctaaatctt 311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 23534576 - 23534654
Alignment:
Q  115 aacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatt 193  Q
    |||||||||| ||||  ||| ||||| ||||| ||||||| |||||| |||| |||||| |||| ||||||||||||||    
T  23534576 aacaaccaagccttatccacaaagtgaggtcgactacatggatcaaattacgccataatgttctatcataaatcatatt 23534654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 46148311 - 46148233
Alignment:
Q  109 aacagcaacaaccaagtctt-actcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    |||| ||||||||||| ||| || ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||||    
T  46148311 aacaacaacaaccaagccttgacccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaa 46148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 48508518 - 48508432
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  48508518 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 48508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 49841894 - 49841784
Alignment:
Q  114 caacaaccaagtcttac-tcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| ||||| || ||| ||| |||| |||||||| |||||| || | |||||| |||| ||||| | ||||||||||| ||||| ||||| |    
T  49841894 caacaaccaagccttacctcgctatgtggggtcagctacatggatcaaattatgccataatgttctatcatataccatatttcgatccaactcattaatc 49841795  T
Q  213 tctagatcttt 223  Q
    | |||||||||    
T  49841794 tttagatcttt 49841784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 40991709 - 40991628
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||| |||||||||| ||||||||||| |||| |||||||| |||||| |||  |||||| |||| ||||||| |||||||    
T  40991709 caacagccaagtcttatctcactaagtggggtcagctacatggatcaaattacaccataatgttctatcataaaccatattt 40991628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 54365003 - 54365060
Alignment:
Q  137 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    |||||||||||||||||| |||||| ||||||||| | |||| ||||||| |||||||    
T  54365003 agtgtggtcggctacatggatcaaattacgtcatagtgttctatcataaaccatattt 54365060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 6780684 - 6780748
Alignment:
Q  130 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||||||||||||||||| | |||||| ||||||||||  |||| ||  |||||||||||    
T  6780684 ctcactaagtgtggtcggctacagggatcaaattacgtcataacgttctatctgaaatcatattt 6780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 15296185 - 15296074
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 212  Q
    ||||||||||| |||| | ||||||||| ||||||| ||||| |||||| |||  |||||| |||| ||  ||||||||||| ||| ||| | ||||| |    
T  15296185 caacaaccaagccttatcccactaagtggggtcggccacatggatcaaattacaccataatgttctatccgaaatcatatttggatccaattcattaacc 15296086  T
Q  213 tctagatctttc 224  Q
    |||| |||||||    
T  15296085 tctaaatctttc 15296074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 38060992 - 38060901
Alignment:
Q  114 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||||||||| ||||| | ||||||||| ||||||||||||| |||||| |||| |||  | |||| ||||||| ||||||| ||| |||||    
T  38060992 caacaaccaattcttatcccactaagtggggtcggctacatggatcaaattacgccatggtgttctatcataaaccatatttggatccaact 38060901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 55384065 - 55384119
Alignment:
Q  156 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 210  Q
    |||||| ||||||||||  |||| ||||||||||||||| ||||||||| |||||    
T  55384065 atcaaattacgtcataacgttctatcataaatcatatttagattcaacttattaa 55384119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 5852337 - 5852390
Alignment:
Q  142 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 195  Q
    |||||||| |||| ||||||| ||||||||||| ||| ||||| ||||||||||    
T  5852337 ggtcggctgcatggatcaaacgacgtcataatactctatcatatatcatatttc 5852390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 30797826 - 30797899
Alignment:
Q  114 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    ||||||||||| |||| || |||||||| |||||| |||||  |||||| ||||||||||| |||| |||||||    
T  30797826 caacaaccaagccttattccactaagtggggtcggttacatagatcaaattacgtcataatgttctatcataaa 30797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 38850379 - 38850326
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 186  Q
    |||||||| ||||||||||||| |||||| ||||||||| | |||| |||||||    
T  38850379 actaagtggggtcggctacatggatcaaattacgtcatagtgttctatcataaa 38850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 48953453 - 48953514
Alignment:
Q  143 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||||||||||| || ||| ||||||||| | |||| ||||||||||||||| ||| |||||    
T  48953453 gtcggctacatggattaaattacgtcatagtgttctatcataaatcatatttggatccaact 48953514  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 5169115 - 5169019
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| ||| |||||    
T  5169115 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggatccaact 5169019  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 42510041 - 42510101
Alignment:
Q  134 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||| ||||||||||||| |||||| |||| |||||| |||  ||||||| |||||||    
T  42510041 ctaagtggggtcggctacatggatcaaattacgccataatgttcaatcataaaccatattt 42510101  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 49503567 - 49503635
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatatt 176  Q
    |||| ||||||||||| |||| | ||||||||  ||||||||||||| |||||| |||| |||||||||    
T  49503567 aacaacaacaaccaagccttatcccactaagtagggtcggctacatggatcaaattacgccataatatt 49503635  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 49888445 - 49888405
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataat 173  Q
    |||||||| ||||||||||||| |||||| |||||||||||    
T  49888445 actaagtggggtcggctacatggatcaaattacgtcataat 49888405  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 52139083 - 52139007
Alignment:
Q  109 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 184  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  52139083 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaataacgtcatagtgttctatcata 52139007  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 82996 - 82905
Alignment:
Q  114 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 204  Q
    ||||||||||| |||| || | |||||| ||||||||||||| ||||||  |||||||| | |||| ||||||||||||||| ||| |||||    
T  82996 caacaaccaagccttattccattaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataaatcatatttggatccaact 82905  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 48140 - 48201
Alignment:
Q  133 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 194  Q
    ||||||||  |||||||||||| |||||| |||| ||||||||||| ||||| | |||||||    
T  48140 actaagtggagtcggctacatggatcaaattacgccataatattctatcatacaccatattt 48201  T

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Target: scaffold0491 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 3713 - 3650
Alignment:
Q  116 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 178  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  3713 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 3650  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 58249 - 58309
Alignment:
Q  132 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatat 192  Q
    ||||||||  ||||||||||||| |||||| |||| |||||| |||| ||||||| |||||    
T  58249 cactaagttgggtcggctacatggatcaaattacgacataatgttctatcataaaccatat 58309  T

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