View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_125 (Length: 320)
Name: NF1343_low_125
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_125 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 2038530 - 2038813
Alignment:
| Q |
28 |
gatattattgtggtagaaatgataggattttgatcaatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaac |
127 |
Q |
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| T |
2038530 |
gatattcttgtggtagaaatgataggattttgatcaatatatagtatatagggtgatacgtatactagtgccgtgaaccaatttaatgtagcctgaaaac |
2038629 |
T |
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| Q |
128 |
ataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacataaaagaggttcaggttcgactagaggaaaatgaat |
227 |
Q |
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| T |
2038630 |
ataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacatagaagaggttcagattcgactaaaggaaaatgaat |
2038729 |
T |
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| Q |
228 |
tatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtataatcta |
314 |
Q |
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| T |
2038730 |
tatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttagtagaatcta |
2038813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 29963629 - 29963349
Alignment:
| Q |
28 |
gatattattgtggtagaaatgataggattttgatcaatata---tagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaa |
124 |
Q |
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| T |
29963629 |
gatattcttgtggtagaaatgataggattttgatcaatataatatagtatatagggggatacgtacactagtgccgtgaaccaatttaatgtagcttgaa |
29963530 |
T |
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| Q |
125 |
aacataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacataaaagaggttcaggttcgactagaggaaaatg |
224 |
Q |
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| T |
29963529 |
aacataaaatcaagtattcaaatgagttgaattta-ttttcttaactatt-----tttttagaaacatagaagaggttcaggttcgactagaggaaaatg |
29963436 |
T |
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| Q |
225 |
aattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtataatcta |
314 |
Q |
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| T |
29963435 |
aattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttagtagaatcta |
29963349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 35193 - 34909
Alignment:
| Q |
28 |
gatattattgtggtagaaatgataggattttgatcaatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaac |
127 |
Q |
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| T |
35193 |
gatattcttgtggtagaaatgataggattttgatcaatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaac |
35094 |
T |
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| Q |
128 |
ataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacata--aaagaggttcaggttcgactagaggaaaatga |
225 |
Q |
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| T |
35093 |
ataaaatcaagtattcaaatgagttgaattta-ttttcttaactattagaaattactagaaacatatggaagaggttcatgttcgactagaggaaaatga |
34995 |
T |
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| Q |
226 |
attatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtataatcta |
314 |
Q |
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| T |
34994 |
attatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttagtagaatcta |
34909 |
T |
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