View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_126 (Length: 320)
Name: NF1343_low_126
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_126 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 11884876 - 11884572
Alignment:
| Q |
1 |
tacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagataaatact |
100 |
Q |
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| T |
11884876 |
tacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagataaatact |
11884777 |
T |
|
| Q |
101 |
cgaattttgcattcaagtgttttctttctgtctgcatccaagactaatctacttccgcttttagttttgagattccctgaaaaagaagtgcctgaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11884776 |
cgaattttgcattcaagtgttttctttctgtctgcatccaagactaatctacttccgcttttagttttgagattccctgaaaaagaagtgcgtgaatttt |
11884677 |
T |
|
| Q |
201 |
ccgggataatagtgagtcgtgcaaatattgccaaagaggaaacacagcacaaagcttctttcgtaggtatggaatatgacactacttcttctttctagag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11884676 |
ccgggataatagtgagtcgtgcaaatattgccaaagaggaaacacagcacaaagcttctttcgtaggtatggaatattacactacttcttctttctagag |
11884577 |
T |
|
| Q |
301 |
cttat |
305 |
Q |
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||||| |
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| T |
11884576 |
cttat |
11884572 |
T |
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