View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_133 (Length: 311)
Name: NF1343_low_133
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_133 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 35440018 - 35440291
Alignment:
| Q |
9 |
agcatagggaagattgatgattttctctcatttgagagaacttttgttcatggtgatgtggtctgctccgtgtcagatccaactggacagatgggaaggg |
108 |
Q |
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| T |
35440018 |
agcattgggaagattgatgattttctctcatttgagagaacttttgttcatggtgatgtggtctgctccgtgtcagatccaactggacagatgggaaggg |
35440117 |
T |
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| Q |
109 |
tgacaagtgttgatttgtttgtggacttggagaatgagaaaggaaagttactaaaaaatgtaaactcggacaaactttcgaagattcggtccatttcaga |
208 |
Q |
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| T |
35440118 |
tgacaagtgttgatttgtttgtggacttggagaatgagaaaggaaagttactaaaaaatgtaaactcggacaaactttcgaagattcggtccatttcaga |
35440217 |
T |
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| Q |
209 |
aggcgattatgtaactaaagggccatggctcggtcgggctcaaagggttgtggacaaagttactgtattgtttg |
282 |
Q |
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| T |
35440218 |
aggcgattatgtaactaaggggccatggctcggtcgggctcaaagggttgtggacaaagttactgtattgtttg |
35440291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 282
Target Start/End: Original strand, 6602841 - 6603098
Alignment:
| Q |
25 |
atgattttctctcatttgagagaacttttgttcatggtgatgtggtctgctccgtgtcagatccaactggacagatgggaagggtgacaagtgttgattt |
124 |
Q |
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| T |
6602841 |
atgatttcctttcattcgagagaacatttgcttacggcgatgtcgtgtgctccctgtcacacccgtctggacagatggggagggtcgtaagtgttgacat |
6602940 |
T |
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| Q |
125 |
gtttgtggacttggagaatgagaaaggaaagttactaaaaaatgtaaactcggacaaactttcgaagattcggtccatttcagaaggcgattatgtaact |
224 |
Q |
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| T |
6602941 |
gtttgtggatttggaaaacattcaaggaaatgtattaaaaaatgtgaactccaagaaacttctgaagattcattccacctcggaaggtgattgcgtaatt |
6603040 |
T |
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| Q |
225 |
aaagggccatggctcggtcgggctcaaagggttgtggacaaagttactgtattgtttg |
282 |
Q |
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| T |
6603041 |
aaagggccatggcttggtcaggttcaaagggtggtggacagattaagtgtattgtttg |
6603098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 282
Target Start/End: Complemental strand, 3700704 - 3700447
Alignment:
| Q |
25 |
atgattttctctcatttgagagaacttttgttcatggtgatgtggtctgctccgtgtcagatccaactggacagatgggaagggtgacaagtgttgattt |
124 |
Q |
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||||||| |||||||| |||||||| |||| | || ||||| || |||||| ||||||| ||| ||||||||||||| ||||| ||||||||| | |
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| T |
3700704 |
atgatttcctctcattcgagagaacatttgcatacggcgatgttgtgtgctccttgtcagacccatctggacagatggggagggtcgtaagtgttgacgt |
3700605 |
T |
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| Q |
125 |
gtttgtggacttggagaatgagaaaggaaagttactaaaaaatgtaaactcggacaaactttcgaagattcggtccatttcagaaggcgattatgtaact |
224 |
Q |
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||| ||||| ||||| || ||||||| || |||||||||| ||||| | |||||| ||||||||| |||||||| ||||| |||| |||| | |
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| T |
3700604 |
gttagtggatttggaaaacattcaaggaaatgtattaaaaaatgtgaactccaagaaacttctgaagattcgttccatttcggaaggtgattgcgtaatt |
3700505 |
T |
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| Q |
225 |
aaagggccatggctcggtcgggctcaaagggttgtggacaaagttactgtattgtttg |
282 |
Q |
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|| || || ||||| |||| || ||||||||| ||||||| | | | ||||||||||| |
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| T |
3700504 |
aacggtccgtggcttggtcaggttcaaagggtggtggacagattaagtgtattgtttg |
3700447 |
T |
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