View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_135 (Length: 308)
Name: NF1343_low_135
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_135 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11884876 - 11884589
Alignment:
| Q |
1 |
tacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagataaatact |
100 |
Q |
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| T |
11884876 |
tacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagataaatact |
11884777 |
T |
|
| Q |
101 |
cgaattttgcattcaagtgttttctttctgtctgcatccaagactaatctacttccgcttttagttttgagattccctgaaaaagaagtgcctgaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11884776 |
cgaattttgcattcaagtgttttctttctgtctgcatccaagactaatctacttccgcttttagttttgagattccctgaaaaagaagtgcgtgaatttt |
11884677 |
T |
|
| Q |
201 |
ccgggataatagtgagtcgtgcaaatattgccaaagaggaaacacagcacaaagcttctttcgtaggtatggaatatgacactacttc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11884676 |
ccgggataatagtgagtcgtgcaaatattgccaaagaggaaacacagcacaaagcttctttcgtaggtatggaatattacactacttc |
11884589 |
T |
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