View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_137 (Length: 304)
Name: NF1343_low_137
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_137 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 14215990 - 14216075
Alignment:
| Q |
35 |
atacacacagggccctcatcttacgtttgctctccgtcttttaatttgttcaaaaagctaagataatgttttcaagataaaagctc |
120 |
Q |
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| T |
14215990 |
atacacacagggccctcatcttacgtttgctctccgtcttttaatttgttcaaaaagctaagataatgttttcaagataaaagctc |
14216075 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 14216177 - 14216234
Alignment:
| Q |
216 |
gattttgttattattcttgttccattttataaagactaaccacaaccagcttcatctc |
273 |
Q |
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| T |
14216177 |
gattttgttattattcttgttccattttataaagactgaccacaaccagcttcttctc |
14216234 |
T |
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