View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_139 (Length: 302)
Name: NF1343_low_139
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_139 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 2800205 - 2800438
Alignment:
| Q |
30 |
tgcatctctctgtagattgccattttggttgatcttgtgcggagggaaatgcacacagaaatctccagtagtacgtcagtagtaaaagatgtccaacata |
129 |
Q |
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| T |
2800205 |
tgcatctctctgtagattgccattttggttgatcttgttcggagggaaatgcacacagaaatctccagtagtacgtcagtagtaaaagatgtccaacata |
2800304 |
T |
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| Q |
130 |
ttgatatatcattctggactcccagcgttcttgagttggtggagtcaattctaagacctccacagggaggacctccttccctaccagagcagagtgatgc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800305 |
ttgatatatcattctggactcccagcgttcttgagttggtggagtcaattctaagacctccacagggaggacctccttccctaccagagcagagtgatgc |
2800404 |
T |
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| Q |
230 |
ggtattcttcctgtttcatagcatttgaaaaagc |
263 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
2800405 |
ggtattcttcctgtttcatagtatttgaaaaagc |
2800438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 4249528 - 4249761
Alignment:
| Q |
30 |
tgcatctctctgtagattgccattttggttgatcttgtgcggagggaaatgcacacagaaatctccagtagtacgtcagtagtaaaagatgtccaacata |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4249528 |
tgcatctctctgtagattgccattttggttgatcttgttcggagggaaatgcacacagaaatctccagtagtacgtcagtagtaaaagatgtccaacata |
4249627 |
T |
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| Q |
130 |
ttgatatatcattctggactcccagcgttcttgagttggtggagtcaattctaagacctccacagggaggacctccttccctaccagagcagagtgatgc |
229 |
Q |
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| T |
4249628 |
ttgatatatcattctggactcccagtgttcttgagttggtggagtcaattctaagacctccacagggaggacctccttccctaccagagcagagtgatgc |
4249727 |
T |
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| Q |
230 |
ggtattcttcctgtttcatagcatttgaaaaagc |
263 |
Q |
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| T |
4249728 |
ggtattcttcctgtttcatagtatttgaaaaagc |
4249761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 31581864 - 31581832
Alignment:
| Q |
265 |
ctagctgttgcattcaaatccaatggatatttt |
297 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31581864 |
ctagctgttgcattcaaatccaatggatatttt |
31581832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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