View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_141 (Length: 296)
Name: NF1343_low_141
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_141 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 12935915 - 12935661
Alignment:
| Q |
10 |
aataatccctcattttattcacaatacaaccatttagtatnnnnnnnnntatgactgtccatgcaatttagtgattaaagtgtataaaatatttttatat |
109 |
Q |
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| T |
12935915 |
aataatccctcattttattcacaatgcaaccattttgtataaaaaaa--tatgactgtctatgcaatttagtgattaaagtatataaaatatttttatat |
12935818 |
T |
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| Q |
110 |
aatttaatgactacttgtaattttcatataatttcaaaaataaattggaaatagtgtgatatttaatgacaaatttatggtttagnnnnnnnnnctttat |
209 |
Q |
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| T |
12935817 |
aatttaatgactacatgtaattttcatataatttaaaaaataaattggaaatagtgtgatatttaaggacaaatttatggtttag-ttttttttctttct |
12935719 |
T |
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| Q |
210 |
ttattcaattctatttaagtgatcctcacgatctaaactattactatctaatctaatc |
267 |
Q |
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| T |
12935718 |
ttattcaattctatttaagtgatcctcacaatctaaactattactatctaatctaatc |
12935661 |
T |
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