View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_146 (Length: 292)
Name: NF1343_low_146
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_146 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 11389627 - 11389547
Alignment:
| Q |
49 |
caccacagacacagaccttcgcccctctcagggcctgaagccggaaagacaaaacatcccacagaattctcctatctctgc |
129 |
Q |
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| T |
11389627 |
caccacagacacagaccttcgcccctctcagggcctgaagccggatagacaaaacatcccacagaattctccgatcactgc |
11389547 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 36651061 - 36650993
Alignment:
| Q |
168 |
tgatgagtatccaaaaaagcgttttggcgaagccaacatttataatagtctgatattggctaaggatga |
236 |
Q |
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| T |
36651061 |
tgatgagtatccaaaaaagcgttttggcgaagccaacatttataatagtttgatattggctaaggatga |
36650993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 36642376 - 36642441
Alignment:
| Q |
171 |
tgagtatccaaaaaagcgttttggcgaagccaacatttataatagtctgatattggctaaggatga |
236 |
Q |
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| T |
36642376 |
tgagtatccaaaacagcattttggcaaagccaacgtttataacaatctggtattggctaaggatga |
36642441 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 21738207 - 21738127
Alignment:
| Q |
49 |
caccacagacacagaccttcgcccctctcagggcctgaagccggaaagacaaaacatcccacagaattctcctatctctgc |
129 |
Q |
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| T |
21738207 |
caccacagacacaaaccttcgcccctctcagggcctgaagccgaatagtcaaaacatcccacagaagtctccgatcactgc |
21738127 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 39433143 - 39433200
Alignment:
| Q |
57 |
acacagaccttcgcccctctcagggcctgaagccggaaagacaaaacatcccacagaa |
114 |
Q |
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| T |
39433143 |
acacaaaccttcgcccctctcagtgcccgaagccgaatagacaactcatcccacagaa |
39433200 |
T |
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