View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_148 (Length: 290)
Name: NF1343_low_148
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_148 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 232307 - 232527
Alignment:
| Q |
1 |
agcaggaaatacaagaaaagtgtaagctggagcagattaaccttccaatcatatcagatcctatggataccgatagctcaacaggtccagtttttgactt |
100 |
Q |
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| T |
232307 |
agcaggaaatacaagaaaagtgtaagctggagcagattaaccttccaatcatatcagatcctatggataccgatagctcaacaggtccagtttttgactt |
232406 |
T |
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| Q |
101 |
tgatgagctcagtaggacactgagaaataggagacactgtgacagggataaaatagaggtagaatacaagaaaaacatggatgcgttgatgtctaagatc |
200 |
Q |
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| T |
232407 |
tgatgagctcagtaggacactgagaaataggagacactgtgacagggataaaatagaggtagaatacaagaaaaacatggatgcgttgatgtctaagatc |
232506 |
T |
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| Q |
201 |
gaaagtaccgcgccaaatttg |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
232507 |
gaaagtacagcgccaaatttg |
232527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30591958 - 30592181
Alignment:
| Q |
1 |
agcaggaaatacaagaaaagtgtaagctggagcagattaaccttccaatcatatcagatcctatggataccgatagctcaaca---ggtccagtttttga |
97 |
Q |
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|||||||||| |||||||||| | || ||||| |||| ||||||||||||| ||||||| |||||||| |||| |||||| |||||||||||||| |
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| T |
30591958 |
agcaggaaatcgtagaaaagtgtgaactagagcaaattagccttccaatcataccagatcccatggatactgatacttcaacaccgggtccagtttttga |
30592057 |
T |
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| Q |
98 |
ctttgatgagctcagtaggacactgagaaataggagacactgtgacagggataaaatagaggtagaatacaagaaaaacatggatgcgttgatgtctaag |
197 |
Q |
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||||||| |||||||||| ||||| | | |||||||||| | |||||||||||||||||||||||| | ||| |||| |||||||| ||||| ||| || |
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| T |
30592058 |
ctttgataagctcagtagaacactaaaagataggagacaatctgacagggataaaatagaggtagactttaagcaaaaaatggatgcattgatatctgag |
30592157 |
T |
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| Q |
198 |
atcgaaagtaccgcgccaaatttg |
221 |
Q |
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|||||||| || || ||||||||| |
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| T |
30592158 |
atcgaaagaacagcaccaaatttg |
30592181 |
T |
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