View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_15 (Length: 704)
Name: NF1343_low_15
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_15 |
 | |
|
| [»] scaffold0153 (1 HSPs) |
| | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 13 - 565
Target Start/End: Complemental strand, 25996626 - 25996065
Alignment:
| Q |
13 |
aatatcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatacaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25996626 |
aatatcaagatttgcatataaaacttcctcaagaaaatttcgagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacttatacaa |
25996527 |
T |
|
| Q |
109 |
ccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25996526 |
ccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatca |
25996427 |
T |
|
| Q |
209 |
agcaagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatc |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25996426 |
agcaagtgatatgcacaaaatttatagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatc |
25996327 |
T |
|
| Q |
309 |
aaacaagtgatgtgcataaatcttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaaag |
408 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25996326 |
aaacaagtgatgtgcataaaacttaatcttttgttttgctccaaaatgaaacaaacttagaacaataaataattaaatacaaacacacgtacatacaaag |
25996227 |
T |
|
| Q |
409 |
tcttttat-----caccattaaagtaacagaaatttaatcattcaggcattttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattca |
503 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
25996226 |
tcttttcttttctcaccattaaagtaacagaaatttaatcattcaggcattttgtcgaacacttggagcacattaaaacaaaatacttgaatcaaattca |
25996127 |
T |
|
| Q |
504 |
aatagagaagaaatgagaaattggagaatcgattggcttaccttagcttatctaacaacaag |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25996126 |
aatagagaagaaatgagaaattggagaatcgattggcttaccttagcttatctaacaacaag |
25996065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 26096008 - 26095712
Alignment:
| Q |
13 |
aatatcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatacaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26096008 |
aatatcaagatttgcatataaaacttcctcaagaaaatttcaagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacgtatacaa |
26095909 |
T |
|
| Q |
109 |
ccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatca |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26095908 |
ccctagcacgtaaacaaaactca--gaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatca |
26095811 |
T |
|
| Q |
209 |
agcaagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattat |
307 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26095810 |
agcaagtgatatgcacaaaatttatacaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattat |
26095712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 345 - 575
Target Start/End: Complemental strand, 26095712 - 26095482
Alignment:
| Q |
345 |
tgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaaagtcttttatcaccattaaagtaacagaaatttaatca |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26095712 |
tgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacaaacgtacatacaaagtcttttctcaccattaaagtaacagaaatttaatca |
26095613 |
T |
|
| Q |
445 |
ttcaggcattttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattcaaatagagaagaaatgagaaattggagaatcgattggcttac |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26095612 |
ttcaggcattttgtcgaacacttggagcacattaaaacaaaaaacttgaatccaattcaaatagagaagaaatgagaaattggagaatcgattggcttac |
26095513 |
T |
|
| Q |
545 |
cttagcttatctaacaacaagaggtgagaga |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26095512 |
cttagcttatctaacaacaagaggtgagaga |
26095482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 26095886 - 26095796
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgca |
324 |
Q |
| |
|
|||||||||| |||| ||| |||||| ||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
26095886 |
agaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatcaagcaagtgatatgca |
26095796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 607
Target Start/End: Complemental strand, 26098 - 25509
Alignment:
| Q |
13 |
aatatcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatacaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26098 |
aatatcaagatttgcatataaaacttcctcaagaaaatttcgagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacttatacaa |
25999 |
T |
|
| Q |
109 |
ccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatca |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25998 |
ccctagcacgtaaacaaaactcttagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatca |
25899 |
T |
|
| Q |
209 |
agcaagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatc |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25898 |
agcaagtgatatgcacaaaatttatagaaatagaaacatttacaattaaaaccaaagtaattgttaatgattcataacatctcttttcattcaaattatc |
25799 |
T |
|
| Q |
309 |
aaacaagtgatgtgcataaatcttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaaag |
408 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25798 |
aaa------------------cttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaaag |
25717 |
T |
|
| Q |
409 |
tcttttatcaccattaaagtaacagaaatttaatcattcaggcattttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattcaaatag |
508 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
25716 |
tcttttctcaccattaaagtaacagaaatttaatcattca-gcattttgtcgaacacttggagcacattaaaacaaaatactt-aatccaattcaaatag |
25619 |
T |
|
| Q |
509 |
agaagaaatgagaaattggagaatcgattggcttaccttagcttatctaacaacaagaggt-----------gagagaaaacagcgggagagtaaacaca |
597 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25618 |
agaagaaatgagaaattggagaatcaattggcttaccttagcttatctaacaacaagaggtgagagagagacgagagaaaacagcgggagagtaaacaca |
25519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 433 - 575
Target Start/End: Complemental strand, 15156810 - 15156668
Alignment:
| Q |
433 |
gaaatttaatcattcaggcattttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattcaaatagagaagaaatgagaaattggagaat |
532 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15156810 |
gaaatttaatcattgaggtattttgtcgaacacttggagcacattaaaacaaaatacttgaatccaattgaaatagagaagaaatgagaaattggagaat |
15156711 |
T |
|
| Q |
533 |
cgattggcttaccttagcttatctaacaacaagaggtgagaga |
575 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15156710 |
tgattggcttaccttaggttatctaacaacaagaggtgagaga |
15156668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 234 - 389
Target Start/End: Complemental strand, 29901242 - 29901088
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgcataaatctta |
333 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| ||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
29901242 |
agaaatagaagcattaacagttaaac-caaggtaattgttaatgactcattgcatctgttttcatacaaattatcaaacaagtgatgtgcataaaacata |
29901144 |
T |
|
| Q |
334 |
atcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaataca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29901143 |
atcttttgttttgctccaaaatgaaacaaacttagaaccaaaaataattaaataca |
29901088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 433 - 507
Target Start/End: Original strand, 45401891 - 45401965
Alignment:
| Q |
433 |
gaaatttaatcattcaggcattttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattcaaata |
507 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
45401891 |
gaaatttactcattcaggcattttgttgaacactttgagcacattaaaacaaaatacttgaattcaattcaaata |
45401965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 29901248 - 29901148
Alignment:
| Q |
127 |
actcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagcaagtgatatgcacaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| |||| || |
|
|
| T |
29901248 |
actcatagaaatagaagcattaacagttaaa-ccaaggtaattgttaatgactcattgcatctgttttcatacaaattatcaaacaagtgatgtgcataa |
29901150 |
T |
|
| Q |
227 |
aa |
228 |
Q |
| |
|
|| |
|
|
| T |
29901149 |
aa |
29901148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 234 - 389
Target Start/End: Original strand, 14713696 - 14713850
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgcataaatctta |
333 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| ||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
14713696 |
agaaatagaagcattaacagttaaac-caaggtaattgttaatgactcattgcatctgttttcatccaaattatcaaacaagtgatgtgcataaaacata |
14713794 |
T |
|
| Q |
334 |
atcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaataca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14713795 |
atcttttgttttgctccaaaatgaaacaaacttagaaccaaaaataattaaataca |
14713850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 14713690 - 14713790
Alignment:
| Q |
127 |
actcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagcaagtgatatgcacaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| |||| || |
|
|
| T |
14713690 |
actcatagaaatagaagcattaacagttaaa-ccaaggtaattgttaatgactcattgcatctgttttcatccaaattatcaaacaagtgatgtgcataa |
14713788 |
T |
|
| Q |
227 |
aa |
228 |
Q |
| |
|
|| |
|
|
| T |
14713789 |
aa |
14713790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 34319085 - 34319158
Alignment:
| Q |
434 |
aaatttaatcattcaggcattttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattcaaata |
507 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | ||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
34319085 |
aaatttaatcatccaggcattttgtcgaactcttagtgcacattaaaacaaactactttaatccaattcaaata |
34319158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 438 - 485
Target Start/End: Original strand, 47853928 - 47853975
Alignment:
| Q |
438 |
ttaatcattcaggcattttgtcgaacacttggagcacactaaaacaaa |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
47853928 |
ttaatcattcaggcattttgtcgaacacttggaacacgttaaaacaaa |
47853975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 507
Target Start/End: Complemental strand, 47719814 - 47719762
Alignment:
| Q |
455 |
ttgtcgaacacttggagcacactaaaacaaaatacttgaatccaattcaaata |
507 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
47719814 |
ttgtcgaacacttggaacacgttaaaacaaactacttaaatccaattcaaata |
47719762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 553
Target Start/End: Complemental strand, 29657764 - 29657719
Alignment:
| Q |
508 |
gagaagaaatgagaaattggagaatcgattggcttaccttagctta |
553 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
29657764 |
gagaaggaatgagaaattagagaatcaattggcttaccttggctta |
29657719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 574
Target Start/End: Complemental strand, 25197921 - 25197868
Alignment:
| Q |
521 |
aaattggagaatcgattggcttaccttagcttatctaacaacaagaggtgagag |
574 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||| |
|
|
| T |
25197921 |
aaattggagaattgattggcttaccttaccttatttaataacaagaggcgagag |
25197868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 13375 - 13415
Alignment:
| Q |
509 |
agaagaaatgagaaattggagaatcgattggcttaccttag |
549 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
13375 |
agaaggaatgagaaattggagaatgaattggcttaccttag |
13415 |
T |
|
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Target: scaffold0003 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 161495 - 161535
Alignment:
| Q |
509 |
agaagaaatgagaaattggagaatcgattggcttaccttag |
549 |
Q |
| |
|
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|
|
| T |
161495 |
agaaggaatgagaaattggagaatgaattggcttaccttag |
161535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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