View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_150 (Length: 288)

Name: NF1343_low_150
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_150
NF1343_low_150
[»] chr6 (21 HSPs)
chr6 (73-285)||(10925421-10925633)
chr6 (73-203)||(8320855-8320985)
chr6 (99-264)||(20348987-20349154)
chr6 (98-252)||(13768995-13769149)
chr6 (132-211)||(34346057-34346136)
chr6 (78-171)||(9402492-9402585)
chr6 (150-252)||(27738747-27738849)
chr6 (92-142)||(32054392-32054442)
chr6 (133-264)||(256490-256622)
chr6 (150-210)||(10188126-10188186)
chr6 (150-252)||(2367301-2367403)
chr6 (174-252)||(7393898-7393976)
chr6 (104-170)||(14321796-14321862)
chr6 (150-252)||(32532515-32532617)
chr6 (150-252)||(32853819-32853921)
chr6 (96-188)||(372857-372948)
chr6 (131-192)||(1947862-1947923)
chr6 (183-252)||(28079707-28079776)
chr6 (183-244)||(32959868-32959929)
chr6 (150-210)||(12141360-12141420)
chr6 (176-252)||(29199896-29199972)
[»] chr8 (19 HSPs)
chr8 (92-263)||(30903963-30904134)
chr8 (76-211)||(36274944-36275078)
chr8 (90-211)||(17108291-17108412)
chr8 (139-264)||(30481419-30481545)
chr8 (98-247)||(28345414-28345563)
chr8 (98-213)||(29918530-29918645)
chr8 (98-211)||(9476065-9476178)
chr8 (78-284)||(17084086-17084294)
chr8 (104-247)||(5700285-5700428)
chr8 (73-169)||(5793483-5793579)
chr8 (73-247)||(39379596-39379768)
chr8 (184-264)||(2183604-2183685)
chr8 (104-252)||(8545360-8545508)
chr8 (134-264)||(14155491-14155622)
chr8 (96-170)||(6388598-6388672)
chr8 (150-246)||(14186295-14186391)
chr8 (150-245)||(45236040-45236135)
chr8 (150-252)||(20399567-20399669)
chr8 (150-252)||(24870035-24870137)
[»] chr4 (38 HSPs)
chr4 (104-252)||(42907822-42907969)
chr4 (99-252)||(33516083-33516237)
chr4 (96-246)||(21713993-21714143)
chr4 (106-264)||(21956813-21956971)
chr4 (94-211)||(4741269-4741385)
chr4 (104-245)||(25298852-25298992)
chr4 (104-246)||(16575047-16575189)
chr4 (98-211)||(36919052-36919165)
chr4 (176-247)||(1866566-1866637)
chr4 (76-170)||(8843898-8843992)
chr4 (76-170)||(8856862-8856956)
chr4 (96-252)||(36306712-36306868)
chr4 (151-264)||(19883055-19883169)
chr4 (99-161)||(37384203-37384265)
chr4 (76-221)||(12505573-12505718)
chr4 (109-225)||(9280928-9281044)
chr4 (176-252)||(14605937-14606013)
chr4 (94-181)||(25265230-25265316)
chr4 (76-247)||(25941045-25941216)
chr4 (135-245)||(33916122-33916233)
chr4 (98-193)||(37926488-37926583)
chr4 (164-284)||(29527807-29527921)
chr4 (98-143)||(39086085-39086130)
chr4 (108-213)||(40420636-40420741)
chr4 (105-264)||(12075630-12075790)
chr4 (90-170)||(19549003-19549083)
chr4 (98-170)||(33616209-33616281)
chr4 (148-211)||(23927694-23927756)
chr4 (106-181)||(24474524-24474599)
chr4 (178-259)||(21544588-21544670)
chr4 (150-252)||(31752437-31752539)
chr4 (108-174)||(50376441-50376507)
chr4 (156-210)||(53906359-53906413)
chr4 (159-252)||(6382284-6382377)
chr4 (190-246)||(15733544-15733600)
chr4 (106-198)||(43351441-43351533)
chr4 (150-210)||(47550407-47550467)
chr4 (150-210)||(48459462-48459522)
[»] chr1 (27 HSPs)
chr1 (105-262)||(48125683-48125841)
chr1 (98-200)||(39219182-39219284)
chr1 (134-264)||(13798198-13798329)
chr1 (76-247)||(42728960-42729131)
chr1 (104-252)||(47644871-47645018)
chr1 (108-193)||(33293590-33293675)
chr1 (92-241)||(48576140-48576289)
chr1 (104-171)||(43513121-43513188)
chr1 (73-154)||(13692543-13692624)
chr1 (90-166)||(5703271-5703346)
chr1 (90-221)||(5283635-5283766)
chr1 (150-264)||(9982888-9983003)
chr1 (88-244)||(16903429-16903593)
chr1 (98-209)||(23719527-23719637)
chr1 (150-252)||(45866196-45866298)
chr1 (104-204)||(8880378-8880478)
chr1 (148-204)||(10105240-10105296)
chr1 (150-210)||(42439723-42439783)
chr1 (76-211)||(41477004-41477139)
chr1 (178-252)||(23058470-23058544)
chr1 (150-252)||(49250784-49250886)
chr1 (156-264)||(34085217-34085326)
chr1 (106-199)||(36421698-36421791)
chr1 (106-146)||(2581505-2581545)
chr1 (156-252)||(9681791-9681886)
chr1 (150-210)||(23490824-23490884)
chr1 (150-210)||(29936392-29936452)
[»] chr2 (20 HSPs)
chr2 (98-239)||(25210301-25210442)
chr2 (98-245)||(30696848-30696995)
chr2 (92-242)||(13531867-13532017)
chr2 (99-252)||(17845402-17845556)
chr2 (149-252)||(45256798-45256901)
chr2 (139-252)||(34458844-34458956)
chr2 (76-169)||(29656829-29656922)
chr2 (104-252)||(35965264-35965412)
chr2 (98-145)||(35248499-35248546)
chr2 (150-252)||(13705372-13705474)
chr2 (150-252)||(37999459-37999561)
chr2 (106-169)||(40359276-40359339)
chr2 (185-247)||(3547177-3547239)
chr2 (150-252)||(9632362-9632464)
chr2 (78-164)||(42995737-42995823)
chr2 (76-197)||(11958917-11959038)
chr2 (104-145)||(31600886-31600927)
chr2 (150-210)||(10920621-10920681)
chr2 (104-144)||(13954675-13954715)
chr2 (104-144)||(14095882-14095922)
[»] scaffold0198 (1 HSPs)
scaffold0198 (139-261)||(20740-20863)
[»] chr5 (21 HSPs)
chr5 (106-264)||(29664902-29665059)
chr5 (108-221)||(7350450-7350563)
chr5 (95-252)||(6810078-6810235)
chr5 (106-247)||(27900418-27900559)
chr5 (108-264)||(38972855-38973012)
chr5 (99-172)||(24207611-24207684)
chr5 (164-252)||(2681205-2681293)
chr5 (178-252)||(23045003-23045077)
chr5 (130-244)||(40187677-40187790)
chr5 (94-195)||(12457436-12457537)
chr5 (108-264)||(16311292-16311448)
chr5 (128-212)||(18451937-18452021)
chr5 (108-171)||(35584050-35584112)
chr5 (104-170)||(457466-457532)
chr5 (150-252)||(4920801-4920903)
chr5 (73-169)||(12770656-12770753)
chr5 (131-252)||(32574950-32575071)
chr5 (104-169)||(12709437-12709503)
chr5 (178-252)||(12712569-12712643)
chr5 (183-264)||(28569020-28569102)
chr5 (184-252)||(12773833-12773901)
[»] chr7 (17 HSPs)
chr7 (150-245)||(26622931-26623026)
chr7 (102-252)||(29292634-29292786)
chr7 (76-164)||(6557825-6557913)
chr7 (104-162)||(11472813-11472871)
chr7 (90-172)||(31345446-31345528)
chr7 (178-258)||(12980385-12980465)
chr7 (104-247)||(23475279-23475423)
chr7 (150-210)||(38152867-38152927)
chr7 (159-247)||(45380096-45380184)
chr7 (104-245)||(19440028-19440170)
chr7 (104-252)||(23533615-23533764)
chr7 (150-252)||(25979928-25980030)
chr7 (150-252)||(41103636-41103738)
chr7 (150-252)||(43507425-43507527)
chr7 (88-228)||(3773987-3774127)
chr7 (204-248)||(6557740-6557784)
chr7 (150-210)||(16866149-16866209)
[»] chr3 (16 HSPs)
chr3 (76-170)||(37032191-37032285)
chr3 (106-211)||(40890278-40890382)
chr3 (134-264)||(42243346-42243477)
chr3 (104-245)||(30904834-30904974)
chr3 (104-244)||(3385875-3386015)
chr3 (99-170)||(27937663-27937734)
chr3 (150-252)||(44172601-44172703)
chr3 (150-252)||(44179301-44179403)
chr3 (150-210)||(39728646-39728706)
chr3 (150-210)||(44639249-44639309)
chr3 (151-210)||(52198131-52198190)
chr3 (118-199)||(4553134-4553214)
chr3 (149-210)||(23546995-23547056)
chr3 (90-162)||(772895-772966)
chr3 (150-210)||(17146203-17146263)
chr3 (150-210)||(48305694-48305754)
[»] scaffold0157 (1 HSPs)
scaffold0157 (76-221)||(14759-14904)
[»] scaffold0005 (1 HSPs)
scaffold0005 (176-252)||(211365-211441)
[»] scaffold1322 (1 HSPs)
scaffold1322 (104-170)||(1040-1106)
[»] scaffold0036 (1 HSPs)
scaffold0036 (166-252)||(33384-33470)
[»] scaffold0264 (1 HSPs)
scaffold0264 (104-248)||(17470-17614)
[»] scaffold0009 (1 HSPs)
scaffold0009 (148-212)||(107442-107506)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 73 - 285
Target Start/End: Complemental strand, 10925633 - 10925421
Alignment:
Q  73 tcgtctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcgg 172  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10925633 tcgtttgaaagactaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattatttttttacattcgg 10925534  T
Q  173 aatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcataaccctatc 272  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  10925533 aatgagtttaggtatgggttcggggtggatacttatatctccattacccatctcgtacccatgttttgaaaacggagaaatccaaactcataaccctatc 10925434  T
Q  273 aaagcggggaaac 285  Q
    |||||||||||||    
T  10925433 aaagcggggaaac 10925421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 8320985 - 8320855
Alignment:
Q  73 tcgtctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcgg 172  Q
    |||||||||||||| | ||| ||| ||||| |||||||||||||||||||| || |||||||||  |||| ||| |||||| || ||||||| ||||| |    
T  8320985 tcgtctgaaagaccgagactctgactgtgtaagtgaaatgatttagggtttaagtttctatttacgtaaatggagtaataagttgattttttgcattcag 8320886  T
Q  173 aatgagtttaggtatgggttcggggtggata 203  Q
    || | || | |||||||||||||||| ||||    
T  8320885 aacgggtctgggtatgggttcggggtcgata 8320855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 20348987 - 20349154
Alignment:
Q  99 gtgttagtgaaatgatttagggtttcagattctattt-atataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    |||| |||||| ||||||||||||| || || ||||| |||||||| |  |||||||||||||||||||||| | || |  ||| |||||| ||||||||    
T  20348987 gtgtgagtgaagtgatttagggtttgagtttatattttatataaaaagtgtaataaattaattttttacatttgcaacggatttgggtatgagttcgggg 20349086  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag-aaatccaaactcata 264  Q
    ||| ||| ||||||  | |||| | || | || ||||||||||||||||| | |||||||||||||||    
T  20349087 tgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaatccaaactcata 20349154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 13768995 - 13769149
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||||| |||||| ||||| ||||| || ||| ||||||||||||||| ||||||||| ||||| ||||||| | | | |||| | ||||||||| |||    
T  13768995 tgtgttactgaaataatttatggtttgagtttcaatttatataaaaggagtaataaattgattttctacattcaggacgggtttggatatgggttctggg 13769094  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||| ||| ||||| | | |||||| || | || || ||||||||| |||| ||||    
T  13769095 tgggtacctatatgtccgttacccgtcccatacccatgttttgaagtcggggaaa 13769149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 34346136 - 34346057
Alignment:
Q  132 atttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatc 211  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| |  ||| ||||| | |||||||||| ||| ||||||    
T  34346136 atttatataaaaggagtaataaattaattttctacattcggaacggatttgggtatagattcggggtgggtacctatatc 34346057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 9402492 - 9402585
Alignment:
Q  78 tgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcg 171  Q
    ||||||||| | ||| ||| ||||| ||||||||||||||||||||  | ||||||||||||||| ||  || |||||| ||||| ||||||||    
T  9402492 tgaaagacctagactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttctacattcg 9402585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 27738747 - 27738849
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| ||||| |   |||||| || | || ||||||||||||||||| |    
T  27738747 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacatatatatctgttacccgtcccatacccgtgttttgaaatcgggg 27738846  T
Q  250 aaa 252  Q
    |||    
T  27738847 aaa 27738849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 32054442 - 32054392
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagggtttcagattctatttatataaa 142  Q
    ||||||| ||| |||||||||||||||||||| || |||||||||||||||    
T  32054442 tttgattatgtaagtgaaatgatttagggtttgagcttctatttatataaa 32054392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 256622 - 256490
Alignment:
Q  133 tttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaacc 232  Q
    |||| ||||||||  || |||||| ||||| ||||||  | | | |||| |||||||||| ||||||| ||| |||||   |||||||| ||||||| ||    
T  256622 tttaaataaaaggggtagtaaattgattttctacatttaggaggggtttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtaccc 256523  T
Q  233 gtgttttgaaatcggagaaatc-caaactcata 264  Q
     |||||||||||||| |||| | ||||||||||    
T  256522 atgttttgaaatcggggaaaactcaaactcata 256490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 10188186 - 10188126
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || ||| |||| |||||||||||||||||| ||| |||||    
T  10188186 ataaaataattttttacatttgggatgggtttgggtatgggttcggggtgggtacctatat 10188126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 2367301 - 2367403
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||||| |||| || | | |||| |||||||||||||||||| |||||||||   | |||||| || | || ||||||||||| ||||| |    
T  2367301 ataaagtaattttttccatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcgggg 2367400  T
Q  250 aaa 252  Q
    |||    
T  2367401 aaa 2367403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 7393976 - 7393898
Alignment:
Q  174 atgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||  ||||||||||||||||||||| |||||   ||||| || |||| ||  |||||||||||||||| ||||    
T  7393976 atgagtttgagtatgggttcggggtggatacctatatacccattatccgtctcttactcgtgttttgaaatcggggaaa 7393898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 14321796 - 14321862
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||||||||||||| | ||| || ||||||||||||||||    ||||||||||||||| |||||||    
T  14321796 agtgaaatgatttaagatttgagtttctatttatataaaataggtaataaattaattttctacattc 14321862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 32532515 - 32532617
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | || |  ||||||||||||||||| ||| |||||   |||||||| || | || ||||||||||||||||| |    
T  32532515 ataaagtaattttttacatttgggacgggtatgagtatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcgggg 32532614  T
Q  250 aaa 252  Q
    |||    
T  32532615 aaa 32532617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 32853819 - 32853921
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||   | |||||| || | || ||||||||||| ||||| |    
T  32853819 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcgggg 32853918  T
Q  250 aaa 252  Q
    |||    
T  32853919 aaa 32853921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 372948 - 372857
Alignment:
Q  96 attgtgttagtgaaatgatttagggtttcagatt-ctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatg 188  Q
    |||||||  ||||||||||||||| ||| ||||| |||||||||||||||| ||||||| || | |||||||||||   |||||||| ||||||    
T  372948 attgtgtgtgtgaaatgatttaggattt-agatttctatttatataaaagg-ataataagttgactttttacattcatgatgagtttgggtatg 372857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 1947923 - 1947862
Alignment:
Q  131 tatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggtt 192  Q
    |||||||||||||||  ||||||||| ||||| |||||| |||| ||||||  |||||||||    
T  1947923 tatttatataaaaggggtaataaattgattttctacatttggaacgagtttgagtatgggtt 1947862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 28079776 - 28079707
Alignment:
Q  183 ggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||||||||||||||| ||| ||||||  | |||||| || |||| || |||||||||||||| ||||    
T  28079776 ggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccatgttttgaaatcggggaaa 28079707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 32959868 - 32959929
Alignment:
Q  183 ggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaat 244  Q
    |||||||||||||||||||||| ||||||  | |||||| |  |||| ||||||||||||||    
T  32959868 ggtatgggttcggggtggatacctatatccccgttacccgttccgtacccgtgttttgaaat 32959929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 12141360 - 12141420
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  12141360 ataaaataattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 12141420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 29199972 - 29199896
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||| |||||||||||||||| ||||| ||||||    |||||| || |||| |||| |||||||||||| ||||    
T  29199972 gagtttgggtatgggttcggggtagatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaa 29199896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 263
Target Start/End: Original strand, 30903963 - 30904134
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaa-tgagtttaggtatggg 190  Q
    ||||| ||||| |||||||||||||| |||||  | |||||||||||||||| |  ||||||||| ||||| ||||||||| | ||| ||| ||||||||    
T  30903963 tttgactgtgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttctacattcgggactga-tttgggtatggg 30904061  T
Q  191 ttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcat 263  Q
    |  ||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||  |||| ||||||||||    
T  30904062 tatggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatcgaggaaacccaaactcat 30904134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 36274944 - 36275078
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    ||||||||||| | ||||||| ||||| |||||||||||||||||||   | |||||||||||||||||| ||| |||||| ||||||||||||||| |     
T  36274944 tctgaaagaccgagactttgactgtgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgattttttacattcgggac 36275042  T
Q  176 gagtttaggtatgggttcggggtggatacttatatc 211  Q
      ||||||||||||||||||||||  ||||||||||    
T  36275043 atgtttaggtatgggttcggggtgagtacttatatc 36275078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 17108291 - 17108412
Alignment:
Q  90 actttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgg 189  Q
    ||||||||||||| |||||||| ||||||||||| || |||||||||||||||| | |||||||||| |||||||||| |||| |||||||| |||||      
T  17108291 actttgattgtgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgattttttacaatcgggatgagtttgggtataa 17108390  T
Q  190 gttcggggtggatacttatatc 211  Q
    ||||| ||||  ||||||||||    
T  17108391 gttcgaggtgtgtacttatatc 17108412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 30481545 - 30481419
Alignment:
Q  139 taaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttt 238  Q
    |||||| |||| |||||||||||||||||||||| | |||||| |||||||||||||||||| ||| |||||| ||||||| | |||| ||  ||| |||    
T  30481545 taaaagaaatagtaaattaattttttacattcgggacgagtttgggtatgggttcggggtgggtacctatatcctcattactcgtctcatactcgtattt 30481446  T
Q  239 tgaaatc-ggagaaatccaaactcata 264  Q
    ||||||| ||| ||| |||||||||||    
T  30481445 tgaaatcaggaaaaacccaaactcata 30481419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 28345414 - 28345563
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| |||||||||||||||  |||| | ||||||||||||||||||  ||||| ||| ||||| ||||||| | |  ||||| |||||||||||||||    
T  28345414 tgtgtgagtgaaatgatttagaatttcggtttctatttatataaaaggggtaatatatttattttctacattcaggacaagtttgggtatgggttcgggg 28345513  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    ||| | | |||||| || |||||||||  ||| |||||||||| ||||||    
T  28345514 tgggtgcctatatcctcgttacccatcctgtacccgtgttttggaatcgg 28345563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 29918530 - 29918645
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||   ||||||||| |||||||||||| || | | ||||  |||||| |||||||    
T  29918530 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgtgtatggtttcgggg 29918629  T
Q  198 tggatacttatatctt 213  Q
    ||| ||| ||||||||    
T  29918630 tgggtacatatatctt 29918645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 9476178 - 9476065
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| |||||||| |||||| ||||||  ||||||||||||| ||||  |||||| |||||||| ||||||||| ||| |||| |||||||||||| ||    
T  9476178 tgtgtgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggatgggtttgggtatgggttcgagg 9476079  T
Q  198 tggatacttatatc 211  Q
    ||| || |||||||    
T  9476078 tgggtatttatatc 9476065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 284
Target Start/End: Complemental strand, 17084294 - 17084086
Alignment:
Q  78 tgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttttt--acattcggaat 175  Q
    ||||||||  ||||| ||||||||| || | ||| |||||||| ||  | || ||||||||||||| | | |||||||| |||||||  |||||||  ||    
T  17084294 tgaaagactgaaactctgattgtgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgat 17084195  T
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcataaccctatcaaa 275  Q
    | |||| | |||| ||||||||||| ||  ||||||  | |||||| ||||||| ||||||||| |||||||||||| || || ||| |||||  |||||    
T  17084194 gggtttggatatgagttcggggtgggtatctatatccccgttacccgtctcgtacccgtgttttaaaatcggagaaaacccaaatcaaaacccagtcaaa 17084095  T
Q  276 gcggggaaa 284  Q
    |||||||||    
T  17084094 gcggggaaa 17084086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 5700285 - 5700428
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    ||||||||||||||| ||||| | ||| ||||||||||||||  ||| ||||||||||| ||||||||| |||  ||| |||||||||||| ||||| ||    
T  5700285 agtgaaatgatttagagtttcggtttcaatttatataaaaggggtaaaaaattaattttatacattcgggatggatttgggtatgggttcgaggtgggta 5700384  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
      ||||||  | |||||  |||| || | |||||||||||||||    
T  5700385 tctatatccccgttaccagtctcatacctgtgttttgaaatcgg 5700428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 5793483 - 5793579
Alignment:
Q  73 tcgtctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacatt 169  Q
    ||||| |||||||  | |||||| |||||| |||||||||||||||||||| || ||||||||||||||||   ||||| |||| ||||||||||||    
T  5793483 tcgtcagaaagacttagactttggttgtgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 5793579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 39379768 - 39379596
Alignment:
Q  73 tcgtctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcgg 172  Q
    |||| ||||||||| | || | |||||||| |||||||||||||| | |||    ||||||||||| | ||||| ||||||||| ||||  |||||||||    
T  39379768 tcgtgtgaaagaccgagacatcgattgtgtaagtgaaatgatttaagatttggatttctatttatacagaagga-taataaattgatttactacattcgg 39379670  T
Q  173 aatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
     | ||||||  ||||| ||||||| ||| ||||| |||| ||||||||| || |||| ||||||||||| |||||    
T  39379669 gacgagtttgagtatgagttcggg-tgggtacttttatcctcattacccgtcccgtacccgtgttttgagatcgg 39379596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 2183685 - 2183604
Alignment:
Q  184 gtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag-aaatccaaactcata 264  Q
    ||||| ||||||||||| ||| ||||||| |||||||  ||||||| |||| |||||||||||||| |||||||||||||||    
T  2183685 gtatgagttcggggtgggtacatatatctccattacctctctcgtacccgtattttgaaatcggagaaaatccaaactcata 2183604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 8545508 - 8545360
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    ||||||||||||||||||||    |||| |||||||||||||| |  |||||| ||||| |||||| || | ||||||  ||||||||||||||||| ||    
T  8545508 agtgaaatgatttagggtttggatttctgtttatataaaaggagttgtaaattgattttctacatttgggacgagtttgagtatgggttcggggtgggta 8545409  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
      ||||||  | |||| | |  | || ||||||||||||||||||||||    
T  8545408 tctatatccccgttactcgttccatacccgtgttttgaaatcggagaaa 8545360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 264
Target Start/End: Original strand, 14155491 - 14155622
Alignment:
Q  134 ttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccg 233  Q
    ||||||||||||  ||||||||| ||||| ||||||  | ||| |||| ||||||  || ||||||||||  |||||| || ||||||||||  || |||    
T  14155491 ttatataaaaggggtaataaattgattttctacatttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatcttatacccg 14155590  T
Q  234 tgttttgaaatc-ggagaaatccaaactcata 264  Q
    |||||||||||| ||| ||| |||||||||||    
T  14155591 tgttttgaaatcgggaaaaacccaaactcata 14155622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 6388672 - 6388598
Alignment:
Q  96 attgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    ||||||| ||||||||||||||||||||  | |||| ||||||||||| |  ||||||||| ||||| |||||||    
T  6388672 attgtgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttctacattc 6388598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 14186295 - 14186391
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    ||||||||||||| ||||||| | | | |||| ||||||||||| |||||  ||| ||||| | | ||||||||| | || ||||||||||||||||    
T  14186295 ataaattaattttctacattcaggacgggtttgggtatgggttcagggtgagtacctatatatccgttacccatcccatacccgtgttttgaaatcg 14186391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 45236040 - 45236135
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    |||||||||||||||||||| || | | || | | |||||||||||||||| ||| |||||   |||||||| || | || |||||||||||||||    
T  45236040 ataaattaattttttacatttgggacgggtatggatatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatc 45236135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 20399567 - 20399669
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||||| ||||||| | | |||| || ||||||||||||||| ||  |||||   | |||||| || | || |||||||||||||||||||    
T  20399567 ataaaataattttttgcattcgggacgggtttgggaatgggttcggggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggag 20399666  T
Q  250 aaa 252  Q
    |||    
T  20399667 aaa 20399669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 24870137 - 24870035
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | ||||||||||||| ||||||||| ||| |||||   | |||||| || | || ||||||||| ||||||| |    
T  24870137 ataaagtaattttttacatttgggacgggtttaggtatgggctcggggtgggtacctatatacccgttacccgtcacatacccgtgttttaaaatcgggg 24870038  T
Q  250 aaa 252  Q
    |||    
T  24870037 aaa 24870035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 42907822 - 42907969
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    |||||||||||||||||||| || ||||||||||||||||| | || |||||| ||||| ||||||||| | |||||| |||||||| ||||||||| ||    
T  42907822 agtgaaatgatttagggtttgagtttctatttatataaaag-agtagtaaattgattttctacattcgggacgagtttgggtatgggctcggggtgggta 42907920  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    | ||||||  |||||| | || |||| |||||||||||| |||||||||    
T  42907921 cctatatccccattactcgtcccgtatccgtgttttgaattcggagaaa 42907969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 33516237 - 33516083
Alignment:
Q  99 gtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggt 198  Q
    |||| |||||||||||||||||||| || || |||||||||||||||  ||||| ||| |||||||||||| |  | | |||| ||||| ||||||||||    
T  33516237 gtgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgattttttacatttgagacgggtttgggtataggttcggggt 33516138  T
Q  199 ggatacttatatcttcattacccatctcgtaaccgtg-ttttgaaatcggagaaa 252  Q
    || ||||||||||    |||||||||||||| ||||| |||| ||||||||||||    
T  33516137 gggtacttatatccctgttacccatctcgtacccgtgttttttaaatcggagaaa 33516083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 21714143 - 21713993
Alignment:
Q  96 attgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgg 195  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||   ||||||||||||||| |||||| |  | ||||||||||||| |||  |    
T  21714143 attgtgtaagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagtttaggtatgagtttag 21714044  T
Q  196 ggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    ||||| ||| |||| ||  |||||||||| ||||  | |||||| ||||||    
T  21714043 ggtgggtacatatacctcgattacccatcacgtactcatgttttaaaatcg 21713993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 264
Target Start/End: Complemental strand, 21956971 - 21956813
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||||||||||||  | || |||||||||||||||  ||||||||| ||||| |||||||| || |||||| ||||||||||||||||||  ||     
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttctacattcgtaacgagtttgggtatgggttcggggtgggcacc 21956873  T
Q  206 tatatcttcattacccatctcgtaaccgtgttttgaaatcgg-agaaatccaaactcata 264  Q
    ||||||  | |||| |||  |||| ||||||||| ||||||| | ||| |||||||||||    
T  21956872 tatatccccgttactcattccgtacccgtgttttaaaatcggaaaaaacccaaactcata 21956813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 4741385 - 4741269
Alignment:
Q  94 tgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    ||||||||| || | || |||||||||||| || |||||||||||||||| | |||||||||| | ||| ||||||||||| | ||||  ||||||||||    
T  4741385 tgattgtgtgagaggaacgatttagggtttgagtttctatttatataaaatggataataaattga-tttatacattcggaacgggtttttgtatgggttc 4741287  T
Q  194 ggggtggatacttatatc 211  Q
    ||||||| ||||||||||    
T  4741286 ggggtgggtacttatatc 4741269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 25298992 - 25298852
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    ||||||||||||||| |||| || ||||||||||| ||||||  | ||||||| |||||  ||||| || | | |||| ||||||||||||||||||| |    
T  25298992 agtgaaatgatttagagtttgag-ttctatttataaaaaaggggtgataaattgattttcaacatttggtacgggtttgggtatgggttcggggtggaca 25298894  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
      ||||||  ||||||||||| |||| |||||||||||||||    
T  25298893 gctatatccccattacccatcccgtacccgtgttttgaaatc 25298852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 16575047 - 16575189
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    |||||||||||||| | ||| || |||||||||||| ||| |  ||||||||||||||||||||||    | |||||| ||||| ||||||| |||| ||    
T  16575047 agtgaaatgatttatgatttgagtttctatttatattaaaagggtaataaattaattttttacatttaagacgagtttgggtataggttcggagtgggta 16575146  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    |||||||| || ||| ||||| |||| ||| ||||| ||||||    
T  16575147 cttatatcctcgttatccatcccgtacccgcgttttaaaatcg 16575189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 36919052 - 36919165
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||||   ||||||| | ||||| ||||| ||||| |||||| ||||||||||  ||     
T  36919052 tgtgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttctacatccggaacgagtttgggtatgggttaagga 36919151  T
Q  198 tggatacttatatc 211  Q
    ||||||| ||||||    
T  36919152 tggatacctatatc 36919165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 1866637 - 1866566
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    |||||| |||||||||||||||||||||| ||||||  |||||||| ||||||| |||| ||||||||||||    
T  1866637 gagtttgggtatgggttcggggtggatacatatatccgcattacccgtctcgtacccgtattttgaaatcgg 1866566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 8843992 - 8843898
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||||||| | || ||| ||| ||||| |||||||||||||||| ||| || |||||||||||| |||||  ||||||||||||||| |||||||    
T  8843992 tctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattc 8843898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 8856956 - 8856862
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||||||| | || ||| ||| ||||| |||||||||||||||| ||| || |||||||||||| |||||  ||||||||||||||| |||||||    
T  8856956 tctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattc 8856862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 36306712 - 36306868
Alignment:
Q  96 attgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgg 195  Q
    ||||||| |||||||||||||| | ||||   ||||||||||||||||||  ||||||||| ||||| ||||||||| | | ||||  || | | |||||    
T  36306712 attgtgtaagtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattcgggacgggtttgagtgtagcttcgg 36306811  T
Q  196 ggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    | | | ||| ||||||  | ||| || |||| || ||||||||||||||||||||||    
T  36306812 gttaggtacctatatccccgttaaccgtctcatacccgtgttttgaaatcggagaaa 36306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 19883169 - 19883055
Alignment:
Q  151 taaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag- 249  Q
    |||||| ||||| ||||||||| | ||||||  |||| |||||||||||||||| ||||||  | |||||| || |||| ||||||||| ||||||| |     
T  19883169 taaattgattttatacattcgggacgagtttgtgtatcggttcggggtggatacctatatccccgttacccttcccgtatccgtgttttaaaatcgggga 19883070  T
Q  250 aaatccaaactcata 264  Q
    ||| |||||||||||    
T  19883069 aaacccaaactcata 19883055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 37384203 - 37384265
Alignment:
Q  99 gtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattt 161  Q
    |||| |||||||||||||||||||| |  |||||||||||||||||| |||||||||| ||||    
T  37384203 gtgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 12505718 - 12505573
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    ||||||||||  | ||||||||||||  | ||||||||||||  |||| || ||||||||||||||||||   |||||||| || |||||| ||| | |     
T  12505718 tctgaaagactgagactttgattgtgcgaatgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattgatgttttaccttcaggac 12505619  T
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattaccc 221  Q
    | |||| |||||| |||| |||||| |||| |||||  ||||||||    
T  12505618 gggtttgggtatgagttcagggtgggtactaatatccccattaccc 12505573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 9281044 - 9280928
Alignment:
Q  109 aatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttat 208  Q
    ||||||||||||||| |  |||||| ||||||||||| |||||||||| ||||| || |||| | |  |||||  ||||| ||||||||||| ||| |||    
T  9281044 aatgatttagggtttgaatttctatctatataaaagggataataaatttattttctatattcaggacaagtttgagtatgagttcggggtgggtacctat 9280945  T
Q  209 atcttcattacccatct 225  Q
    ||  |||||| ||||||    
T  9280944 attctcattatccatct 9280928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 14606013 - 14605937
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||| |||||||||||||||||| ||| ||||||    |||||| ||||||| |||| |||||||||||||||||    
T  14606013 gagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaa 14605937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 25265316 - 25265230
Alignment:
Q  94 tgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagttt 181  Q
    ||||||||| ||| |||||||||||  ||| || ||||||||||||| |||| |||||||||| ||||| ||||||||  ||||||||    
T  25265316 tgattgtgtgagtaaaatgatttagaatttgagtttctatttatatagaagg-ataataaattgattttctacattcgagatgagttt 25265230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 25941045 - 25941216
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    |||||||||| || ||| |||| |||| |||||| |||||||||  ||  | ||||||||||||||||||  | ||||||| ||||| ||||| ||  |     
T  25941045 tctgaaagactaagactatgatcgtgtgagtgaattgatttaggccttgggtttctatttatataaaaggggttataaattgattttctacatccgagac 25941144  T
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
      |||| |||||||||||||||||| ||| ||| |   | |||||  || |||| |||||||||||||||||    
T  25941145 atgtttgggtatgggttcggggtgggtacctatcttcccgttacctgtcccgtacccgtgttttgaaatcgg 25941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 33916122 - 33916233
Alignment:
Q  135 tatataaaaggaataataaattaa-ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccg 233  Q
    |||||| |||| |||||||||||| ||||||||||| || |||||||| |||||| |||  |||| | ||||||||||   |||| || ||||||| |||    
T  33916122 tatatataagggataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccg 33916221  T
Q  234 tgttttgaaatc 245  Q
    || |||||||||    
T  33916222 tgatttgaaatc 33916233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 37926488 - 37926583
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    ||||| ||| ||||||||||  |||| || ||| ||| |||| ||||| |||||||||||||||  ||||||| | |||||||| |||||||||||    
T  37926488 tgtgtgagttaaatgatttaaagtttgagtttcaattgatatgaaagggataataaattaatttactacattcaggatgagtttgggtatgggttc 37926583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 29527807 - 29527921
Alignment:
Q  164 tacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcat 263  Q
    ||||||||||  | |||| |||||||||||||||||| ||| ||||||  | |||||| || |||| |||| |||||||||||| |||| || |          
T  29527807 tacattcggatagggtttgggtatgggttcggggtgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaaccca------ 29527900  T
Q  264 aaccctatcaaagcggggaaa 284  Q
    |||||||||||||||||||||    
T  29527901 aaccctatcaaagcggggaaa 29527921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 39086085 - 39086130
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaa 143  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  39086085 tgtgtgagtgaaatgatttagggtttaagtttctatttatataaaa 39086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 40420741 - 40420636
Alignment:
Q  108 aaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatactta 207  Q
    ||||||||| ||||||  | ||||||||||||||||||  ||||||| | ||||| |||||||||  || |||| ||||| ||||||| |||| ||  ||    
T  40420741 aaatgatttggggttttggtttctatttatataaaaggggtaataaagtgattttctacattcggggtgggtttgggtataggttcggagtggctaggta 40420642  T
Q  208 tatctt 213  Q
    ||||||    
T  40420641 tatctt 40420636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 264
Target Start/End: Complemental strand, 12075790 - 12075630
Alignment:
Q  105 gtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatac 204  Q
    ||||||||||| || |||| || |||||||||||||||| |  ||||||||| ||||| ||||||| | | ||||||  ||| | ||| ||||||| |||    
T  12075790 gtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttctacattccggacgagtttgagtacgagtttggggtgggtac 12075691  T
Q  205 ttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatc-caaactcata 264  Q
     ||| ||   ||||||  || |||| |||||||||||||| ||| ||| | ||||||||||    
T  12075690 atatctccctattacctgtcacgtacccgtgttttgaaattggaaaaaactcaaactcata 12075630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 19549083 - 19549003
Alignment:
Q  90 actttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||||||| |||| |||||||||||||| ||||| || || | ||||||||||| | ||||| |||| | |||||||||||    
T  19549083 actttgatcgtgtcagtgaaatgatttaaggtttgagtttttgtttatataaaatggataatgaattgaatttttacattc 19549003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 33616281 - 33616209
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    ||||| ||||||||||||||||||||    || |||||||||||||||  ||||||||| ||||| |||||||    
T  33616281 tgtgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttctacattc 33616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 23927756 - 23927694
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatc 211  Q
    ||||||||||||||| || |||||  |||||||| |||| ||||||||||||||||| ||||||    
T  23927756 taataaattaattttcta-attcgagatgagtttgggtaggggttcggggtggatacctatatc 23927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 24474599 - 24474524
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagttt 181  Q
    |||||||| ||||| | | || |||||||||||||||||| |||| || || ||||||||||||||| | ||||||    
T  24474599 tgaaatgaattaggatatgagtttctatttatataaaagggataaaaatttgattttttacattcgggacgagttt 24474524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 21544588 - 21544670
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatccaaac 259  Q
    |||| |||||||||||||||||| ||| ||||||  |||||||  || |||| |||| |||||||||| ||| ||||||||||    
T  21544588 gtttgggtatgggttcggggtgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaatccaaac 21544670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 31752437 - 31752539
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | || | ||||||||||||||||||  || |||||  || |||| | |||| || ||||||||||||||||| |    
T  31752437 ataaagtaattttttacatttgggacgggtatgggtatgggttcggggtgggaacctatatactcgttactcgtctcatacccgtgttttgaaatcgggg 31752536  T
Q  250 aaa 252  Q
    |||    
T  31752537 aaa 31752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 50376507 - 50376441
Alignment:
Q  108 aaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaa 174  Q
    |||| |||||| |||| || |||||||||||||||| | | |||||||| ||||| |||||||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttctacattcggaa 50376441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 53906413 - 53906359
Alignment:
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||||||||||||| || | |||||||| |||||||||||||||| ||| |||||    
T  53906413 taattttttacatttgggacgagtttagatatgggttcggggtgggtacctatat 53906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 6382377 - 6382284
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||||| || | | |||| |||||||||||||||||| ||| |||||   | |||||| || | || ||||||||||| ||||||||||    
T  6382377 ttttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggagaaa 6382284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 15733600 - 15733544
Alignment:
Q  190 gttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    ||||||||||| ||| ||||||| | |||||| ||||||| |||| |||||||||||    
T  15733600 gttcggggtgggtacatatatctccgttacccgtctcgtacccgtattttgaaatcg 15733544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 43351533 - 43351441
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggt 198  Q
    |||||||||| ||||||| || || ||||||| ||||||   ||||||||| |||||| ||||| |  |||| ||| | ||||||||||||||    
T  43351533 tgaaatgattcagggtttgagtttttatttatgtaaaagaggtaataaattgatttttcacatttgagatgaatttggatatgggttcggggt 43351441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 47550467 - 47550407
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  47550467 ataaaataattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 47550407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 48459462 - 48459522
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || ||| || | |||||||||||||||||| ||| |||||    
T  48459462 ataaagtaattttttacatttgggatgggtatgggtatgggttcggggtgggtacctatat 48459522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 48125841 - 48125683
Alignment:
Q  105 gtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatac 204  Q
    ||||||| |||||| |||| || |||||||||||||||||   || |||||| ||||| ||||||||  | |||||| ||||||||||||||||||||||    
T  48125841 gtgaaataatttagagtttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatgggttcggggtggatac 48125742  T
Q  205 ttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatccaaactca 262  Q
     |||||| || |||||| || |||| ||||||||| ||||| ||| |||||||||||||    
T  48125741 ctatatcctcgttacccgtcccgtacccgtgttttaaaatcaggaaaaatccaaactca 48125683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 39219182 - 39219284
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| || ||||||||||||||||| || |||||||||||||||||   ||||||||||||||| ||||||  ||| |||||| |||||||||||||||    
T  39219182 tgtgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgggtatgggttcgggg 39219281  T
Q  198 tgg 200  Q
    |||    
T  39219282 tgg 39219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 264
Target Start/End: Original strand, 13798198 - 13798329
Alignment:
Q  134 ttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccg 233  Q
    ||||||||||||  ||||||||| ||||| ||||||  | ||| |||||||||||  || ||||||||||  |||||| || ||||||||||| || |||    
T  13798198 ttatataaaaggggtaataaattgattttctacatttaggatgggtttaggtatgaatttggggtggataaatatatcctcgttacccatctcatacccg 13798297  T
Q  234 tgttttgaaatc-ggagaaatccaaactcata 264  Q
    |||||||||||| ||| ||| |||||||||||    
T  13798298 tgttttgaaatcgggaaaaacccaaactcata 13798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 42729131 - 42728960
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    ||||||||||  | ||| ||| ||||| ||||||||||||||| || | || |||||||||||||||||| || ||||||| ||||| ||||||| |||     
T  42729131 tctgaaagactgagactctgactgtgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttctacattcagaac 42729032  T
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    | |||| |||||| ||||||||| | |||  |||||  ||| || | ||| ||| || ||||||||||||||    
T  42729031 gtgtttgggtatgagttcggggtagttacccatatccccatcactcgtcttgtacccatgttttgaaatcgg 42728960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 47645018 - 47644871
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    |||||||||||||||| | | || |||||||||||||||||| ||||||||||| | |||||||||||| | |||| | | |||| ||||||||| | ||    
T  47645018 agtgaaatgatttaggatctgagtttctatttatataaaagggataataaattattattttacattcgggacgagtatggatatgagttcggggtaggta 47644919  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||| ||||  ||||| || || |||| | ||||||||| ||||| ||||    
T  47644918 cttctatc-ccattatccgtcccgtacctgtgttttgagatcggggaaa 47644871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 33293675 - 33293590
Alignment:
Q  108 aaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    |||||||||||||||| || ||||||| |||||||| |  || |||||| ||||| ||||||||||| |||||| |||||||||||    
T  33293675 aaatgatttagggtttgagtttctattgatataaaatgggtactaaattgattttctacattcggaacgagtttgggtatgggttc 33293590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 48576289 - 48576140
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggt 191  Q
    |||||| |||| |||||||||||||||||||| ||||| |||||||| |||| | || ||||||| ||||| | ||||||| |  ||||||||  |||||    
T  48576289 tttgatcgtgtaagtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttcttcattcgggacaagtttaggcgtgggt 48576190  T
Q  192 tcggggtggatacttatatcttcattacccatctcgtaaccgtgttttga 241  Q
    || | ||||  |||| ||||  |||||||| |||| || | |||||||||    
T  48576189 tcagagtgggcacttttatccccattacccgtctcatacctgtgttttga 48576140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 43513188 - 43513121
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcg 171  Q
    |||||||| ||||||||||| || |||||||||||||||| || | ||||||| ||||||||||||||    
T  43513188 agtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgattttttacattcg 43513121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 13692543 - 13692624
Alignment:
Q  73 tcgtctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaa 154  Q
    ||||||||||||  || ||| | |||||||  |||||||||||||||||||  | |||||||||||||||||| ||||||||    
T  13692543 tcgtctgaaagagtaagactctaattgtgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaa 13692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 5703346 - 5703271
Alignment:
Q  90 actttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttac 166  Q
    |||||||| ||||||||||||||||||||| ||| || || || |||||||||||  |||||||||| |||||||||    
T  5703346 actttgatcgtgttagtgaaatgatttaggatttgagtttata-ttatataaaagatataataaattgattttttac 5703271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 5283766 - 5283635
Alignment:
Q  90 actttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgg 189  Q
    ||||||||||||| || |||||||||||  |||| || | ||||||||| |||||| || ||||||| ||||| |||| ||   | | |||||||||||     
T  5283766 actttgattgtgtgagagaaatgatttaaagtttgagttcctatttatacaaaagggatgataaattgattttctacaatccagacgggtttaggtatga 5283667  T
Q  190 gttcggggtggatacttatatcttcattaccc 221  Q
    ||||| ||||| ||||| ||||  ||||||||    
T  5283666 gttcgaggtgggtacttctatccccattaccc 5283635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 9983003 - 9982888
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||| | ||||||| ||| |||| |||||||||||||||||| ||| |||||  || ||||||||| | |  |||||||||||||| || |    
T  9983003 ataaagtaattttctgcattcgggatgggtttgggtatgggttcggggtgggtacctatatactcgttacccatcccattcccgtgttttgaaattgggg 9982904  T
Q  250 -aaatccaaactcata 264  Q
     |||| ||||||||||    
T  9982903 aaaattcaaactcata 9982888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 16903429 - 16903593
Alignment:
Q  88 aaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaa--------ttttttacattcggaatgagt 179  Q
    ||||| ||||||||| |||||||| ||||||||||| || || ||||||||||||| |   |||||||| |        |||||||||||||| | | ||    
T  16903429 aaactctgattgtgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgattttttttttttttacattcgggacgggt 16903528  T
Q  180 ttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaat 244  Q
    || |||||| ||||||||||| ||| ||||||  ||||||| ||| ||||  |||||||| ||||    
T  16903529 ttgggtatgagttcggggtgggtacctatatccccattacctatcccgtactcgtgttttaaaat 16903593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 23719527 - 23719637
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||||||||||||||||||  |||| || |||||||||||||||| |  || |||||| | ||| ||||||||| | ||||||  ||||| |||||||     
T  23719527 tgtgttagtgaaatgatttatagtttgagtttctatttatataaaaagggtagtaaattga-tttgtacattcgggacgagtttgagtatgagttcggga 23719625  T
Q  198 tggatacttata 209  Q
    ||||||| ||||    
T  23719626 tggatacctata 23719637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 45866298 - 45866196
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || ||| || | |||||| ||| ||||||| ||| |||||  ||||||||  |||| || ||||||||||||||||| |    
T  45866298 ataaagtaattttttacatttgggatgggtatgggtatgagtttggggtgggtacctatatactcattacctgtctcatacccgtgttttgaaatcgggg 45866199  T
Q  250 aaa 252  Q
    |||    
T  45866198 aaa 45866196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 8880378 - 8880478
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    ||||||||||||||  |||| || ||||||||||| ||||||  ||||||||| ||||||  |||| || | | |||| ||||||||| | |||||||||    
T  8880378 agtgaaatgatttaaagtttgagtttctatttataaaaaaggggtaataaatttatttttagcatttgggacgggtttgggtatgggtccagggtggata 8880477  T
Q  204 c 204  Q
    |    
T  8880478 c 8880478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 10105240 - 10105296
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatac 204  Q
    ||||||| |||||||||||||||| || |||||| |||||| |||||| ||||||||    
T  10105240 taataaagtaattttttacattcgaaacgagtttgggtatgagttcggagtggatac 10105296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 42439783 - 42439723
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || |||||||| | |||||||||||||||| ||| |||||    
T  42439783 ataaagtaattttttacatttgggatgagtttggatatgggttcggggtgggtacctatat 42439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 41477139 - 41477004
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    ||||||||||  | ||||||| ||||| | |||||| ||||||||||||   |||| ||||||||||| |  ||| ||||| ||||| | | ||||| |     
T  41477139 tctgaaagacggagactttgactgtgtgaatgaaataatttagggtttccatttctctttatataaaaagggtaacaaattgattttctgctttcgggac 41477040  T
Q  176 gagtttaggtatgggttcggggtggatacttatatc 211  Q
    | |||| ||||||| |||||||||| ||| ||||||    
T  41477039 gggtttgggtatggattcggggtgggtacatatatc 41477004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 23058470 - 23058544
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||| |||||||||||||||||| ||| ||||||  | |||||| |||||||  ||  |||||||||||||||||    
T  23058470 gtttgggtatgggttcggggtgggtacctatatccccgttacccgtctcgtactcgcattttgaaatcggagaaa 23058544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 49250886 - 49250784
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| || ||||||||||| || | | |||| |||||||||||| ||||||||| |||||   |||||||| || | || ||||||||||| ||||| |    
T  49250886 ataaagtagttttttacatttgggacgggtttgggtatgggttcgaggtggatacctatatacccattacccgtcccatacccgtgttttgagatcgggg 49250787  T
Q  250 aaa 252  Q
    |||    
T  49250786 aaa 49250784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 34085217 - 34085326
Alignment:
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatc 254  Q
    ||||||||||||||  | | |||| | |||||||||||||||||| ||| |||| |  | ||||||||| | ||  |||||||||||||| ||| ||| |    
T  34085217 taattttttacatttaggacgagtatgggtatgggttcggggtgggtacatataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaacc 34085316  T
Q  255 caaactcata 264  Q
    ||||||||||    
T  34085317 caaactcata 34085326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 36421698 - 36421791
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtg 199  Q
    ||||||||||||| |||  || || ||||||||||| ||| |||||||||| ||||| || |||||  | |||||| |||||  ||||||||||    
T  36421698 tgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttctatattcgagacgagtttgggtataagttcggggtg 36421791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 2581505 - 2581545
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaagga 146  Q
    ||||||||||||| |||| || |||||||||||||||||||    
T  2581505 tgaaatgatttagagtttgagtttctatttatataaaagga 2581545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 9681886 - 9681791
Alignment:
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||| ||||||||  |||  ||| | |||||||||||| ||  ||| |||||| |||||| ||||| |||| || |||||||||||||||||||    
T  9681886 taattttctacattcgagatggatttggatatgggttcggg-tgagtacatatatcatcattatccatcacgtacccttgttttgaaatcggagaaa 9681791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 23490884 - 23490824
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||||||| ||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  23490884 ataaattagttttttacatttgggacgggttttggtatgggttcggggtgggtacctatat 23490824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 29936392 - 29936452
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  29936392 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 29936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 25210301 - 25210442
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| |||||||||||||||||||| || |||||||||||||||| |  ||| ||||| ||||| ||||||||| | | |||| |||||||||| ||||    
T  25210301 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattcgggaggggttttggtatgggtttgggg 25210400  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgtttt 239  Q
    ||| ||| |||||| || |||||| || | || |||||||||    
T  25210401 tgggtacatatatcctcgttacccgtcccatacccgtgtttt 25210442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 30696848 - 30696995
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| ||||| |||||||||||||| |  |||||||||||||||| |  ||||||||| |||||||||||| || ||  |||| |||||| ||||||||    
T  30696848 tgtgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacatttgggataggtttgggtatgagttcgggg 30696947  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    ||| ||| |||||||   |||||| ||||||| || |||||| |||||    
T  30696948 tgggtacatatatctctgttacccgtctcgtatccatgttttaaaatc 30696995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 13531867 - 13532017
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggt 191  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||||| | |||||||||| ||||| |||||  ||   | ||||  || |||||    
T  13531867 tttgattgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacatgtggggcgggtttgagtgtgggt 13531966  T
Q  192 tcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaa 242  Q
    |||||||| |||| |||||| || ||||| |||  ||| || |||||||||    
T  13531967 tcggggtgaatacatatatcctcgttacctatccagtatccatgttttgaa 13532017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 17845556 - 17845402
Alignment:
Q  99 gtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaatt-aattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    |||| |||||||||||||||| ||  || |||||||||||||||| | |||||||||| | |||||||||||||  | | |||| ||||||||||  |||    
T  17845556 gtgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatgggttaaggg 17845457  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||| ||||||||| | |||||||  |||| ||  ||||||||||||||| |||||    
T  17845456 tgggtacttatatgtccattaccggtctcatactcgtgttttgaaatcgaagaaa 17845402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 45256798 - 45256901
Alignment:
Q  149 aataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgga 248  Q
    |||||| |||||||||||||| || | | ||||||||||||||||||||||| |||||||||   ||||| || |||| || |||||||||||||||||     
T  45256798 aataaagtaattttttacatttgggacgggtttaggtatgggttcggggtgggtacttatatacccattaaccgtctcatacccgtgttttgaaatcggg 45256897  T
Q  249 gaaa 252  Q
    ||||    
T  45256898 gaaa 45256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 34458956 - 34458844
Alignment:
Q  139 taaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttt 238  Q
    ||||||| |||||||||| |||||||||||||| || |||||| | || | |||||||  |||||| |||||||||||||| | |  |||| ||||||||    
T  34458956 taaaagggataataaatttattttttacattcg-aacgagtttggataggagttcgggacggatacatatatcttcattactcgttccgtacccgtgttt 34458858  T
Q  239 tgaaatcggagaaa 252  Q
    |||||| |||||||    
T  34458857 tgaaattggagaaa 34458844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 29656922 - 29656829
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacatt 169  Q
    ||||||||||  | ||||||| ||||| ||| |||||||||||||||   | || ||||||||||||||| |||||||||| ||||| ||||||    
T  29656922 tctgaaagactgagactttgactgtgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgattttatacatt 29656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 35965264 - 35965412
Alignment:
Q  104 agtgaaatgatttagggtttcagattctattta-tataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggat 202  Q
    |||||||||||||| || ||||  | ||||||| |||||||||   |||||||| ||||| ||||||||| | | |||| ||||||||||||| |||| |    
T  35965264 agtgaaatgatttatggattcaattcctatttagtataaaaggggcaataaattgattttctacattcgggacgggtttgggtatgggttcggagtgggt 35965363  T
Q  203 acttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    || | ||||  |||||| |||| | || ||||||||||||||||| ||||    
T  35965364 acatgtatccccattacacatc-catacccgtgttttgaaatcggggaaa 35965412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 35248546 - 35248499
Alignment:
Q  98 tgtgttagtgaaatgatttagggtttcagattctatttatataaaagg 145  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  35248546 tgtgtgagtgaaatgatttagggtttcattttctatttatataaaagg 35248499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 13705474 - 13705372
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||| ||||| || | | ||||||||||||||||||||||| ||| |||||   | |||||  |||| || ||||||||||||||||| |    
T  13705474 ataaagtaatttttcacatttgggacgggtttaggtatgggttcggggtgggtacctatatacccgttacctgtctcatacccgtgttttgaaatcgggg 13705375  T
Q  250 aaa 252  Q
    |||    
T  13705374 aaa 13705372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 37999459 - 37999561
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||| ||||||||||| |||||||||   | |||||| |||| || ||||||||||| ||||| |    
T  37999459 ataaagtaattttttacatttgggacgggtttgggtatgagttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttgagatcgggg 37999558  T
Q  250 aaa 252  Q
    |||    
T  37999559 aaa 37999561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 40359276 - 40359339
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacatt 169  Q
    |||||||||||||  ||| || |||||||||||||||||   ||||||||| ||||||||||||    
T  40359276 tgaaatgatttagactttgagtttctatttatataaaagatgtaataaattgattttttacatt 40359339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 3547177 - 3547239
Alignment:
Q  185 tatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    |||||||||||||||| ||| ||||||| | |||||| || |||| |||| ||||||||||||    
T  3547177 tatgggttcggggtgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcgg 3547239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 9632362 - 9632464
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| || ||||||||||| || | | |||| |||||||||||||||||||||| |||||   |||||||| || | || |||||||| || ||||| |    
T  9632362 ataaagtagttttttacatttgggacgggtttgggtatgggttcggggtggatacctatatacccattacccgtcccatacccgtgtttcgagatcgggg 9632461  T
Q  250 aaa 252  Q
    |||    
T  9632462 aaa 9632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 42995737 - 42995823
Alignment:
Q  78 tgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttttt 164  Q
    |||||||| || |||||||||||||  || || |  |||| ||||| || || ||||||||||||||  ||||||||||||||||||    
T  42995737 tgaaagactaatactttgattgtgtgggtaaagtagtttacggtttaagtttttatttatataaaagagataataaattaatttttt 42995823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 11958917 - 11959038
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    ||||||||||| | ||| | | ||||| ||| ||||||| |||| ||| || ||||  |||||||||||   ||||||||| ||||| |||||||   ||    
T  11958917 tctgaaagaccgagactctaactgtgtaagttaaatgatctaggttttgagtttctgcttatataaaagaggtaataaattgattttatacattcatgat 11959016  T
Q  176 gagtttaggtatgggttcgggg 197  Q
    |||||| |||||| ||||||||    
T  11959017 gagtttgggtatgagttcgggg 11959038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 31600927 - 31600886
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaagg 145  Q
    ||||||||||||||| |||| || ||||||||||||||||||    
T  31600927 agtgaaatgatttagagtttgagtttctatttatataaaagg 31600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 10920621 - 10920681
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | |  ||| |||||||||||||||||||||| |||||    
T  10920621 ataaagtaattttttacatttgggacggatttgggtatgggttcggggtggatacctatat 10920681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 13954675 - 13954715
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaag 144  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  13954675 agtgaaatgatttagggttcgagtttctatttatataaaag 13954715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 14095882 - 14095922
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaag 144  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  14095882 agtgaaatgatttagggttcgagtttctatttatataaaag 14095922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 20863 - 20740
Alignment:
Q  139 taaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttt 238  Q
    ||||| |||||||||||| ||||||||||||||||| | ||||  ||||||||||| |||||||| |||||||  |||||||| |||| ||  || ||||    
T  20863 taaaacgaataataaattgattttttacattcggaacgggtttgagtatgggttcgaggtggatatttatatccccattacccgtctcatactcgagttt 20764  T
Q  239 tgaaatc-ggagaaatccaaactc 261  Q
    ||||||| ||| ||||||||||||    
T  20763 tgaaatcgggaaaaatccaaactc 20740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 29664902 - 29665059
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||||||| |||| || ||||||||| ||||||||  || |||||| ||||| ||||||||| | | |||| |||||| |||||  |||| |||     
T  29664902 tgaaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgggtatgagttcgaagtgggtacc 29665001  T
Q  206 tatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcata 264  Q
    ||||||  | |||||||||  ||| ||||||||||||||||||| || |||||||||||    
T  29665002 tatatccccgttacccatcatgtacccgtgttttgaaatcggag-aacccaaactcata 29665059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 7350563 - 7350450
Alignment:
Q  108 aaatgatttagggtttcagatt-ctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatactt 206  Q
    ||||||||||||||||| |||| |||||||||||||||  |||||||||||||||| |||||| |  | | ||||| ||||||||||||||||||| | |    
T  7350563 aaatgatttagggtttc-gattactatttatataaaagcgataataaattaattttctacatttgagacgggtttaagtatgggttcggggtggatgcct 7350465  T
Q  207 atatcttcattaccc 221  Q
    |||||  ||||||||    
T  7350464 atatccccattaccc 7350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 6810078 - 6810235
Alignment:
Q  95 gattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcg 194  Q
    |||||||| |||||||| ||||| |||||  | ||||||| ||||||||||   |||||||| |||||   ||||||| ||| |||| ||||||||||||    
T  6810078 gattgtgtgagtgaaatcatttaaggtttgggtttctattgatataaaaggggcaataaattgattttcaccattcgggatgggtttgggtatgggttcg 6810177  T
Q  195 gggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||  |||||||||| || |||||| |  |||| ||||||| | ||||||| ||||    
T  6810178 gggtgagtacttatatcctcgttacccgttccgtacccgtgttctaaaatcggggaaa 6810235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 27900559 - 27900418
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||||||||||||||| |||||||||||||||||    |||||||| ||||| |||||||||   |  ||| |||||||||||| | ||| |||     
T  27900559 tgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgattttatacattcggggcggatttgggtatgggttcgagatgggtacc 27900460  T
Q  206 tatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    ||||||  |||||||| || | || || ||||||||||||||    
T  27900459 tatatccacattacccgtcccatacccatgttttgaaatcgg 27900418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 38972855 - 38973012
Alignment:
Q  108 aaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatactta 207  Q
    ||||||||||||||||||| ||| ||||||||||||||  ||||||||| ||||| | |||| |  ||| ||||  ||||||||||||||||| ||| ||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgattttatgcatttgagatgggtttgagtatgggttcggggtgggtaccta 38972954  T
Q  208 tatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatccaaactcata 264  Q
    |||   | ||||| ||| | || || |||||||||||| ||| ||| |||||||||||    
T  38972955 tattcccgttacctatcccatacccatgttttgaaatcgggaaaaacccaaactcata 38973012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 24207611 - 24207684
Alignment:
Q  99 gtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcgg 172  Q
    |||| |||||| | ||||||||||| || || |||||||||||||||| ||||||||||||||| |||||||||    
T  24207611 gtgtgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttctacattcgg 24207684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 2681205 - 2681293
Alignment:
Q  164 tacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||||  | |||| ||||||||||||||||||||||| |||||  ||||||||||| |||| | || |||||||||||| ||||    
T  2681205 tacattcggatagggtttgggtatgggttcggggtggatactcatatccccattacccatcccgtacctgtattttgaaatcggggaaa 2681293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 23045077 - 23045003
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||| |||||||||||||||||| ||| ||||||| | ||||||||| |||| |||| |||||||||||| ||||    
T  23045077 gttttggtatgggttcggggtgggtacatatatctccgttacccatcccgtacccgtattttgaaatcggggaaa 23045003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 40187790 - 40187677
Alignment:
Q  130 ctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgta 229  Q
    |||||||||||||||   ||||||||||||||| || |||||| | |||||| |||||| |||  ||||| |||| ||||||| | |||||| ||||| |    
T  40187790 ctatttatataaaagaggtaataaattaattttctatattcgggacgagtttgggtatgagtt-tgggtgaatacctatatctccgttacccgtctcgca 40187692  T
Q  230 accgtgttttgaaat 244  Q
     ||||||||||||||    
T  40187691 cccgtgttttgaaat 40187677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 12457436 - 12457537
Alignment:
Q  94 tgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    ||||||||| |||||||||||||||  |||  | |||||||||||| |||||  ||||||||| ||||| ||||||||| | | |||| |||||| ||||    
T  12457436 tgattgtgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgggtatgagttc 12457535  T
Q  194 gg 195  Q
    ||    
T  12457536 gg 12457537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 264
Target Start/End: Complemental strand, 16311448 - 16311292
Alignment:
Q  108 aaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatactta 207  Q
    ||||||||||||||||  | |||||||||||||||||| |||||||||| |||||  |||||||  |   ||||   |||||||||||||||| ||| ||    
T  16311448 aaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttcaacattcgagacaggtttgaatatgggttcggggtgggtaccta 16311350  T
Q  208 tatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatc-caaactcata 264  Q
    ||||    ||| || |||||||  ||||||||||||||||| ||| | ||||||||||    
T  16311349 tatccctgttatccgtctcgtactcgtgttttgaaatcggaaaaaactcaaactcata 16311292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 18452021 - 18451937
Alignment:
Q  128 ttctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatct 212  Q
    ||||||| |||||||||| |||||||||| ||||| |||| |||| | ||||||   |||| ||||||||||| |||||||||||    
T  18452021 ttctattaatataaaagggataataaattgattttctacaatcgggacgagtttgattatgagttcggggtgggtacttatatct 18451937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 35584050 - 35584112
Alignment:
Q  108 aaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcg 171  Q
    |||||||||||||||| || ||||||||||||||||||  ||||||||| ||||| ||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaagg-gtaataaattgattttgtacattcg 35584112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 457532 - 457466
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||||||||||||||| |||  | ||||||||||||||||||  ||||||||| ||||| |||||||    
T  457532 agtgaaatgatttaggattttggtttctatttatataaaaggtgtaataaattgattttatacattc 457466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 4920801 - 4920903
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||||||| |||||   | |||||| || | || ||||||||||| ||||| |    
T  4920801 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtggatacctatatacccgttacccgtcccatacccgtgttttgagatcgggg 4920900  T
Q  250 aaa 252  Q
    |||    
T  4920901 aaa 4920903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 12770656 - 12770753
Alignment:
Q  73 tcgtctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaata-ataaattaattttttacatt 169  Q
    |||| ||||||||| | |||||| ||||   |||||||||||||||||||| |  |||||||||| ||||| ||| | ||||||| ||||||||||||    
T  12770656 tcgtttgaaagaccgagactttggttgtacgagtgaaatgatttagggtttgaatttctatttatgtaaaaagaaaagataaattgattttttacatt 12770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 32575071 - 32574950
Alignment:
Q  131 tatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaa 230  Q
    |||||||||||||||  ||||||||| || || |||||||||   | |||| ||| |||||||||| ||| ||| ||||||    ||||||||| ||||     
T  32575071 tatttatataaaaggggtaataaattgatattctacattcggggcgggtttgggtttgggttcgggatgggtacatatatccatgttacccatcccgtat 32574972  T
Q  231 ccgtgttttgaaatcggagaaa 252  Q
    | ||||||||||||||| ||||    
T  32574971 ctgtgttttgaaatcggggaaa 32574950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 12709437 - 12709503
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaata-ataaattaattttttacatt 169  Q
    |||||||||||||||||||| |  |||||||||| ||||| ||| | ||||||| ||||||||||||    
T  12709437 agtgaaatgatttagggtttgaatttctatttatgtaaaaagaaaagataaattgattttttacatt 12709503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 12712643 - 12712569
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||| |||||||||||| ||||| ||| ||||||| | ||| || || |||| |||| |||||||||||||||||    
T  12712643 gtttgggtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaa 12712569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 28569102 - 28569020
Alignment:
Q  183 ggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag-aaatccaaactcata 264  Q
    |||||||||||||||||| ||| ||||||  | |||||| || |||| |||  |||||||||||| | |||||||||||||||    
T  28569102 ggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccgcattttgaaatcggggaaaatccaaactcata 28569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 12773901 - 12773833
Alignment:
Q  184 gtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||||| ||||| ||| ||||||| | ||| || || |||| |||| |||||||||||||||||    
T  12773901 gtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaa 12773833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 26622931 - 26623026
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    ||||| ||||||||| |||||| || |||||| |||||||||||||||||| |||||||||   ||||||||||| | || |||||||||||||||    
T  26622931 ataaaataattttttgcattcgaaacgagtttgggtatgggttcggggtgggtacttatatacccattacccatcccatacccgtgttttgaaatc 26623026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 29292634 - 29292786
Alignment:
Q  102 ttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtgg- 200  Q
    |||||||||| |||||||||||    |||| |||||||||||||  || |||||| ||||| ||||||||  | |||||||||||||||||  ||||||     
T  29292634 ttagtgaaataatttagggtttggatttctctttatataaaaggggtagtaaattgattttctacattcgagacgagtttaggtatgggtttagggtggg 29292733  T
Q  201 -atacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
      ||| ||||||    |||||||||||||| ||||||||||||||||| ||||    
T  29292734 cgtacctatatccatgttacccatctcgtacccgtgttttgaaatcggggaaa 29292786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 6557913 - 6557825
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttttt 164  Q
    ||||||||||  | ||||||||||||| ||||||||||||||| |||| ||||||||||| ||| ||| | |||||||| | |||||||    
T  6557913 tctgaaagactgagactttgattgtgtgagtgaaatgatttagagtttgagattctatttctatgaaaaggataataaactgatttttt 6557825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 11472871 - 11472813
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttt 162  Q
    ||||||||||||||||||||  | |||||||||||||||||| |||||||||| |||||    
T  11472871 agtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgatttt 11472813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 31345446 - 31345528
Alignment:
Q  90 actttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcgg 172  Q
    ||||||||||||| ||||||||||| ||| |||| || ||||||||||||||||    || |||||| |||||||||||||||    
T  31345446 actttgattgtgtgagtgaaatgatatagagtttgagtttctatttatataaaaatggtagtaaattgattttttacattcgg 31345528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 12980385 - 12980465
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaa 258  Q
    |||| |||||||||||||||||| |||||||||   |||||||| || | || ||||||||||||||||| |||| |||||    
T  12980385 gtttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaaccaaa 12980465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 23475423 - 23475279
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttttt-acattcggaatgagtttaggtatgggttcggggtggat 202  Q
    ||||||||||||||| ||||  | || |||||||| |||| |  || |||||| ||||||| |||||||| | | |||| ||||||||||||  |||| |    
T  23475423 agtgaaatgatttagagtttgggtttttatttatacaaaacgggtagtaaattgatttttttacattcgggacgggtttgggtatgggttcgaagtgggt 23475324  T
Q  203 acttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    || ||||||  ||||||||||| |  | |||||||||||||||||    
T  23475323 acatatatccccattacccatcccaaacccgtgttttgaaatcgg 23475279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 38152867 - 38152927
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | ||||||||||||||||||||||| ||| |||||    
T  38152867 ataaaataattttttacatttgggacgggtttaggtatgggttcggggtgggtacctatat 38152927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 45380096 - 45380184
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    ||||||||||| || | ||||||||||||||||||||||||| ||| |||||   | |||||| || | || |||| ||||||||||||    
T  45380096 ttttttacatttgggacgagtttaggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgg 45380184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 19440170 - 19440028
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttttt-acattcggaatgagtttaggtatgggttcggggtggat 202  Q
    ||||||||||||||| ||||  | |||||||||||  |||||  |  |||||| ||||||| |||||||| | | |||| ||||||||||||  |||| |    
T  19440170 agtgaaatgatttagagtttgggtttctatttataccaaaggggtggtaaattgatttttttacattcgggacgggtttgggtatgggttcgaagtgggt 19440071  T
Q  203 acttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    || ||||||  ||||||||||| |  | ||||||||| |||||    
T  19440070 acatatatccccattacccatcccaaacccgtgttttcaaatc 19440028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 23533764 - 23533615
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataa-taaattaatttttt-acattcggaatgagtttaggtatgggttcggggtgga 201  Q
    ||||||||||||||| ||||  | ||||| ||||| ||||||  | | |||||| ||||||| |||||||| | |||||| ||||||||||||  ||||     
T  23533764 agtgaaatgatttagagtttgggtttctaattatacaaaaggggttagtaaattgatttttttacattcgggacgagtttgggtatgggttcgaagtggg 23533665  T
Q  202 tacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||| ||||||  ||||||||||| | || |||| |||| ||||||| ||||    
T  23533664 tacatatatc-ccattacccatcgcatacccgtattttcaaatcggggaaa 23533615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 25980030 - 25979928
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| |||| |  ||| |||||| ||| ||||||| ||| ||||| | | |||||| |||| || | ||||||||||||||| |    
T  25980030 ataaaataattttttacatttggaaaggatttgggtatgagtttggggtgggtacatatatatccgttacccgtctcatacctgtgttttgaaatcgggg 25979931  T
Q  250 aaa 252  Q
    |||    
T  25979930 aaa 25979928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 41103636 - 41103738
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||||||||||  | | | ||||| ||||||||||||||||| |||||||||   | ||| || || | || ||||||||||||||||| |    
T  41103636 ataaaataattttttacatttaggacgggtttatgtatgggttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcgggg 41103735  T
Q  250 aaa 252  Q
    |||    
T  41103736 aaa 41103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 43507425 - 43507527
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | |||| ||||||||||||| |||||| | | |||||   | |||||| |||| || || |||||||||||||| |    
T  43507425 ataaaataattttttacatttgggacgagtataggtatgggttcagggtgggtgcctatatacccgttacccgtctcatacccatgttttgaaatcgggg 43507524  T
Q  250 aaa 252  Q
    |||    
T  43507525 aaa 43507527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 3773987 - 3774127
Alignment:
Q  88 aaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtat 187  Q
    ||||| ||| ||||| ||| ||||||||| | ||||  | | ||| ||||||||||||  ||||||||| ||||| || |||||| | |  |||  ||||    
T  3773987 aaactctgactgtgtgagtaaaatgattttgcgtttgggttcctaattatataaaaggggtaataaattgattttctaaattcgggacggatttgagtat 3774086  T
Q  188 gggttcggggtggatacttatatcttcattacccatctcgt 228  Q
    |||||| |||||| ||| |||||| || |||||| ||||||    
T  3774087 gggttcagggtgggtacctatatcctcgttacccgtctcgt 3774127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 6557784 - 6557740
Alignment:
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcgga 248  Q
    |||||||||||||||| | ||||||| ||||||||| ||||||||    
T  6557784 cttatatcttcattactcgtctcgtacccgtgtttttaaatcgga 6557740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 16866149 - 16866209
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  16866149 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 16866209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 37032285 - 37032191
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    ||||||||||| | ||| ||||||| | |||||||||||||||||||| || || ||||||||||||| |  ||||||||||||||| |||||||    
T  37032285 tctgaaagaccgagactctgattgtatgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttctacattc 37032191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 40890278 - 40890382
Alignment:
Q  106 tgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||| ||| |||| || ||||||||||||| ||||| ||||||||| ||||| |||||| |  ||||| || ||||||||||||| || ||||||    
T  40890278 tgaaatgatctagagtttgagtttctatttatatagaagga-taataaattgattttctacatttgagatgagcttgggtatgggttcggcgtagatact 40890376  T
Q  206 tatatc 211  Q
    ||||||    
T  40890377 tatatc 40890382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 264
Target Start/End: Original strand, 42243346 - 42243477
Alignment:
Q  134 ttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccg 233  Q
    ||||||||||||  ||||||||| ||||| ||||||  | ||| |||| ||||||  || ||||||||||  |||||| || ||||||||||| || |||    
T  42243346 ttatataaaaggggtaataaattgattttctacatttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatctcatacccg 42243445  T
Q  234 tgttttgaaatc-ggagaaatccaaactcata 264  Q
    ||| |||||||| ||| ||| |||||||||||    
T  42243446 tgtattgaaatcgggaaaaacccaaactcata 42243477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 30904974 - 30904834
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    |||||||||||| |||||||  | ||||||||||||||||||  || |||||| ||||  ||||||||  | |  ||| |||||||||||||||||| ||    
T  30904974 agtgaaatgattaagggtttgggtttctatttatataaaaggggtagtaaattgatttcctacattcgagacggatttgggtatgggttcggggtgggta 30904875  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    | ||||||  |  ||||| || |||| |||||||||||||||    
T  30904874 cctatatc-cccgtacccgtcccgtacccgtgttttgaaatc 30904834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 3386015 - 3385875
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    |||||||||||||||| ||||   || |||||||| ||||||  || |||| | |||||||||||| || | | |||| ||||||| |||| ||||| ||    
T  3386015 agtgaaatgatttaggatttcgatttttatttatagaaaagggttactaaaatgattttttacattaggtacgggttttggtatggattcgtggtggcta 3385916  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaat 244  Q
    | |||||| || |||||  || |||| ||||||||||||||    
T  3385915 cctatatcctcgttacctgtcccgtacccgtgttttgaaat 3385875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 27937663 - 27937734
Alignment:
Q  99 gtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||| ||||||||||||||||||||  | |||||||||||||||||   ||||||||||||||  |||||||    
T  27937663 gtgtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaatttcctacattc 27937734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 44172601 - 44172703
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| |||||||||   | |||||| || | || ||||||||||| ||||| |    
T  44172601 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcgggg 44172700  T
Q  250 aaa 252  Q
    |||    
T  44172701 aaa 44172703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 44179301 - 44179403
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| |||||||||   | |||||| || | || ||||||||||| ||||| |    
T  44179301 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcgggg 44179400  T
Q  250 aaa 252  Q
    |||    
T  44179401 aaa 44179403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 39728646 - 39728706
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| |||||||||    
T  39728646 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatat 39728706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 44639249 - 44639309
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| |||| | |||| |||||||||||||||||| ||| |||||    
T  44639249 ataaaataattttttacatttggaacgggtttgggtatgggttcggggtgggtacctatat 44639309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 52198131 - 52198190
Alignment:
Q  151 taaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||| |||||||||||||| |||| | |||| |||||||||||||||||| ||| |||||    
T  52198131 taaagtaattttttacatttggaacgggtttgggtatgggttcggggtgggtacctatat 52198190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 4553134 - 4553214
Alignment:
Q  118 gggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtg 199  Q
    |||||| || || |||||||||||||  ||||||||||| ||||||||||||||  | | ||||  ||||||||||||||||    
T  4553134 gggtttgagtttttatttatataaaaa-aataataaattgattttttacattcgagacgggtttgagtatgggttcggggtg 4553214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 23547056 - 23546995
Alignment:
Q  149 aataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||||| || ||||||||||| || | |||||| |||||||||||||||||| ||| |||||    
T  23547056 aataaagtagttttttacatttgggacgagtttgggtatgggttcggggtgggtacctatat 23546995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 772966 - 772895
Alignment:
Q  90 actttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaatttt 162  Q
    |||| |||||||| |||||||||||| | ||||| || ||||||||||| ||||||  ||||||||| |||||    
T  772966 acttagattgtgtgagtgaaatgattcaaggtttgagtttctatttatacaaaagg-gtaataaattgatttt 772895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 17146263 - 17146203
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | ||||  ||||||||||||||||||||| |||||    
T  17146263 ataaagtaattttttacatttgggaagggtttgtgtatgggttcggggtggatacctatat 17146203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 48305754 - 48305694
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| |||| | |||| ||||| |||||||||||| ||| |||||    
T  48305754 ataaagtaattttttacatttggaacgggtttgggtataggttcggggtgggtacctatat 48305694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 14759 - 14904
Alignment:
Q  76 tctgaaagaccaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaat 175  Q
    ||||||||||  | ||||||||||||  | ||||||||||||  |||| || ||||||||||||||||||   |||||||| || |||||| ||| | |     
T  14759 tctgaaagactgagactttgattgtgcgaatgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattgatgttttaccttcaggac 14858  T
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattaccc 221  Q
    | |||| |||||| |||| |||||| |||| |||||  ||||||||    
T  14859 gggtttgggtatgagttcagggtgggtactaatatccccattaccc 14904  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 211365 - 211441
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||| |||||||||||||||||| ||| ||||||    |||||| ||||||| |||| |||||||||||||||||    
T  211365 gagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaa 211441  T

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Target: scaffold1322 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 1040 - 1106
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattc 170  Q
    |||||||||||||| | ||| || |||||||||||||||| |  ||||||||||||||| |||||||    
T  1040 agtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattc 1106  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 33384 - 33470
Alignment:
Q  166 cattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||| | |||||| |||||||||||||||||| ||| |||||   | |||||| || | || ||||||||||||||||| ||||    
T  33384 cattcgggacgagtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaa 33470  T

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Target: scaffold0264 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 248
Target Start/End: Complemental strand, 17614 - 17470
Alignment:
Q  104 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    |||||||||||||| |||||  | |||||||||||||||| |  ||||||||   |||| ||||||||| |   |||| | || ||||| ||| ||||||    
T  17614 agtgaaatgatttatggtttgcgtttctatttatataaaatgggtaataaatgggttttatacattcggtacatgtttggataagggtttgggatggata 17515  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcgga 248  Q
    | ||||||  | |||||| ||  ||| || |||||||||||||||    
T  17514 cctatatccccgttacccttcctgtatccatgttttgaaatcgga 17470  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 107506 - 107442
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatct 212  Q
    ||||||| |||||||  |||||||||| ||||||   |||| ||||||||||| |||||||||||    
T  107506 taataaagtaattttcaacattcggaacgagtttgaatatgagttcggggtgggtacttatatct 107442  T

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