View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_154 (Length: 269)

Name: NF1343_low_154
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_154
NF1343_low_154
[»] chr6 (4 HSPs)
chr6 (92-210)||(16772647-16772765)
chr6 (92-210)||(32708005-32708123)
chr6 (93-210)||(16777983-16778100)
chr6 (99-182)||(32703644-32703727)
[»] scaffold0015 (2 HSPs)
scaffold0015 (93-210)||(29708-29825)
scaffold0015 (92-210)||(24392-24510)
[»] chr1 (5 HSPs)
chr1 (93-210)||(2797186-2797303)
chr1 (93-210)||(42375121-42375238)
chr1 (92-210)||(2790756-2790874)
chr1 (93-211)||(21010586-21010705)
chr1 (159-211)||(24567532-24567584)
[»] chr8 (4 HSPs)
chr8 (92-210)||(91580-91698)
chr8 (93-210)||(29010963-29011080)
chr8 (93-210)||(86264-86381)
chr8 (93-210)||(19802735-19802852)
[»] chr5 (3 HSPs)
chr5 (92-210)||(12842727-12842845)
chr5 (93-210)||(37023108-37023225)
chr5 (99-210)||(24092267-24092379)
[»] chr3 (7 HSPs)
chr3 (91-210)||(13723233-13723352)
chr3 (98-210)||(13719336-13719448)
chr3 (92-210)||(6806765-6806884)
chr3 (93-210)||(4099570-4099688)
chr3 (118-210)||(26137131-26137223)
chr3 (216-248)||(31581832-31581864)
chr3 (124-210)||(23619202-23619289)
[»] chr7 (4 HSPs)
chr7 (93-210)||(11708868-11708985)
chr7 (92-210)||(11716383-11716501)
chr7 (99-210)||(13160340-13160452)
chr7 (92-191)||(13166800-13166900)
[»] chr4 (2 HSPs)
chr4 (92-210)||(14026807-14026927)
chr4 (92-136)||(14023866-14023910)
[»] chr2 (3 HSPs)
chr2 (118-210)||(36314770-36314863)
chr2 (165-210)||(20925572-20925617)
chr2 (118-204)||(37758843-37758931)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 16772765 - 16772647
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16772765 atgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 16772666  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  16772665 caagccaccatgtttgaca 16772647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 32708005 - 32708123
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  32708005 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 32708104  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  32708105 caagccaccatgtttgaca 32708123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 16778100 - 16777983
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  16778100 tgatacagagtaaaactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 16778001  T
Q  193 aagccaccatgtttgaca 210  Q
    |||||||||| |||||||    
T  16778000 aagccaccatatttgaca 16777983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 32703644 - 32703727
Alignment:
Q  99 agagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaa 182  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  32703644 agagtaagacactaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaa 32703727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 29825 - 29708
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  29825 tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 29726  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  29725 aagccaccatgtttgaca 29708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 24510 - 24392
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  24510 atgatacagagtaagactttaatatcgcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 24411  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  24410 caagccaccatgtttgaca 24392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 2797303 - 2797186
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  2797303 tgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaat 2797204  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  2797203 aagccaccatgtttgaca 2797186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 42375121 - 42375238
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  42375121 tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 42375220  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  42375221 aagccaccatgtttgaca 42375238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 2790874 - 2790756
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| || |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  2790874 atgatacaaagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaatttcaccaccctactattgacaataaggccaa 2790775  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  2790774 caagccaccatgtttgaca 2790756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 21010705 - 21010586
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    |||| ||||| ||||| || |||||||||| ||||||||| ||||||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  21010705 tgatacagagaaagacattcatatggcatagactttgcagtcaccaccctaccatgctagctttccaatttcaccaccctactattgacaataaggccaa 21010606  T
Q  192 taagccaccatgtttgacaa 211  Q
     |||||||||||||||||||    
T  21010605 caagccaccatgtttgacaa 21010586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 24567584 - 24567532
Alignment:
Q  159 attccaccaccctactattcacaataaggccaataagccaccatgtttgacaa 211  Q
    ||||||||||||||||||| ||  |||| | || |||||||||||||||||||    
T  24567584 attccaccaccctactattgactttaagccaaacaagccaccatgtttgacaa 24567532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 91580 - 91698
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  91580 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 91679  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  91680 caagccaccatgtttgaca 91698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 29011080 - 29010963
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||     
T  29011080 tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactatcgacaataaggccaac 29010981  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  29010980 aagccaccatgtttgaca 29010963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 86264 - 86381
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  86264 tgatacagagtaagacattaatatggcatagactttgcagctaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 86363  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  86364 aagccaccatgtttgaca 86381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 19802735 - 19802852
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  19802735 tgatacagagtaagacattaatatggcatagagttttcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 19802834  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  19802835 aagccaccatgtttgaca 19802852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 12842727 - 12842845
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  12842727 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 12842826  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  12842827 caagccaccatgtttgaca 12842845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 37023225 - 37023108
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  37023225 tgatacagagtaagactttaatatggcatagattttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 37023126  T
Q  193 aagccaccatgtttgaca 210  Q
    |||||||||| |||||||    
T  37023125 aagccaccatatttgaca 37023108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 24092379 - 24092267
Alignment:
Q  99 agagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagcc 197  Q
    |||| ||||| ||| ||||||||| ||||||||||||||||||||  ||| ||||||||| | | ||||||||||||||| ||||||||||||| |||||    
T  24092379 agagcaagacattactatggcatagactttgcagccaccaccctaccatgctagctttcctagttcaccaccctactattgacaataaggccaacaagcc 24092280  T
Q  198 accatgtttgaca 210  Q
    |||||||||||||    
T  24092279 accatgtttgaca 24092267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 13723352 - 13723233
Alignment:
Q  91 tatgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggcca 190  Q
    |||||| || |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13723352 tatgatacacagtaagacattaatatgacatagactttgcagccaccaccctatatgttagctttccaattccaccaccctactatttacaataaggcca 13723253  T
Q  191 ataagccaccatgtttgaca 210  Q
    | ||||||||||||||||||    
T  13723252 acaagccaccatgtttgaca 13723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 13719448 - 13719336
Alignment:
Q  98 cagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaataagcc 197  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  13719448 cagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccttactattgacaataaggccaacaagcc 13719349  T
Q  198 accatgtttgaca 210  Q
    |||||||||||||    
T  13719348 accatgtttgaca 13719336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 6806884 - 6806765
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccc-tatatgttagctttccaattccaccaccctactattcacaataaggcca 190  Q
    ||||| ||||||||||| |||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  6806884 atgatacagagtaagacattaatatgacatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 6806785  T
Q  191 ataagccaccatgtttgaca 210  Q
    | ||||||||||||||||||    
T  6806784 acaagccaccatgtttgaca 6806765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 4099570 - 4099688
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    |||| ||||| ||||| ||| ||||||||| |||||| |||||||||||||  ||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  4099570 tgatacagagcaagacattactatggcatagactttgtagccaccaccctaccatgctagctttcctattccaccaccctactattgacaataaggccaa 4099669  T
Q  192 taagccaccatgtttgaca 210  Q
     |||||||||| |||||||    
T  4099670 caagccaccatttttgaca 4099688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 26137223 - 26137131
Alignment:
Q  118 gcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgaca 210  Q
    ||||| ||||||||||||||||||||| ||| ||||   || ||||||||||||||||||| ||||||||||||| ||| |||||| |||||||    
T  26137223 gcatagactttgcagccaccaccctatcatgctagcac-cctattccaccaccctactattgacaataaggccaacaagtcaccatatttgaca 26137131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 31581864 - 31581832
Alignment:
Q  216 ctagctgttgcattcaaatccaatggatatttt 248  Q
    |||||||||||||||||||||||||||||||||    
T  31581864 ctagctgttgcattcaaatccaatggatatttt 31581832  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 23619202 - 23619289
Alignment:
Q  124 actttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgaca 210  Q
    ||||||| ||||||||||||  ||| ||| ||||| ||||||||| ||||||||| ||  |||||| || |||||| |||||||||||    
T  23619202 actttgcggccaccaccctaccatgctagttttcccattccaccatcctactattgactttaaggcaaacaagccatcatgtttgaca 23619289  T

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Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 11708868 - 11708985
Alignment:
Q  93 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 192  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||     
T  11708868 tgatacagagtaagacattaatatagcatagactttgcagccaccaccctatatgctagctttccaattccacaaccctattattgacaataaggccaac 11708967  T
Q  193 aagccaccatgtttgaca 210  Q
    ||||||||||||||||||    
T  11708968 aagccaccatgtttgaca 11708985  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 11716383 - 11716501
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 191  Q
    ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| |||||||||||||    
T  11716383 atgatacagagtaagacattaatatgacatagactttgcagccaccaccctatatgctagcttttcaattccacaaccctattattgacaataaggccaa 11716482  T
Q  192 taagccaccatgtttgaca 210  Q
     ||||||||||||||||||    
T  11716483 caagccaccatgtttgaca 11716501  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 13160340 - 13160452
Alignment:
Q  99 agagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagcc 197  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  13160340 agagcaagacattaatatggcatagactttgcagccaccaccctaccatgctagctttccaattccaccaccctactattgaaaataaggccaacaagcc 13160439  T
Q  198 accatgtttgaca 210  Q
     ||||||||||||    
T  13160440 tccatgtttgaca 13160452  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 13166800 - 13166900
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggcca 190  Q
    ||||| ||||| ||||| ||||||||||||| | |||||||||||||| |||  ||| || |||||||||||||||||||||||||| ||||||||||||    
T  13166800 atgatacagagcaagacattaatatggcatagaatttgcagccaccacgctaccatgctacctttccaattccaccaccctactattgacaataaggcca 13166899  T
Q  191 a 191  Q
    |    
T  13166900 a 13166900  T

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Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 14026807 - 14026927
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccacca--ccctactattcacaataaggcc 189  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||  |||||||||| |||||||||||    
T  14026807 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctaactttccaattccaccaccccctactattgacaataaggcc 14026906  T
Q  190 aataagccaccatgtttgaca 210  Q
    || ||||||||||||||||||    
T  14026907 aacaagccaccatgtttgaca 14026927  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 14023866 - 14023910
Alignment:
Q  92 atgatgcagagtaagactttaatatggcataaactttgcagccac 136  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||    
T  14023866 atgatacagagtaagacattaatatggcatagactttgcagccac 14023910  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 36314863 - 36314770
Alignment:
Q  118 gcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattca-caataaggccaataagccaccatgtttgaca 210  Q
    |||||||||||||||||||||||    ||| ||||||||| |||||||||||||| |||| | |||||||||||| || |||||||||||||||    
T  36314863 gcataaactttgcagccaccacctaccatgctagctttcctattccaccaccctaatattgaacaataaggccaacaaaccaccatgtttgaca 36314770  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 20925617 - 20925572
Alignment:
Q  165 ccaccctactattcacaataaggccaataagccaccatgtttgaca 210  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  20925617 ccaccctactattgacaataaggccaacaagccaccatgtttgaca 20925572  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 37758843 - 37758931
Alignment:
Q  118 gcataaactttgcagccaccaccctat-atgttagctttccaattccacca-ccctactattcacaataaggccaataagccaccatgt 204  Q
    ||||| ||||||||||||||| ||||| ||| ||||||||  ||||||||| |||||||||| ||  ||| ||||| ||||||||||||    
T  37758843 gcatagactttgcagccaccaacctatcatgctagctttctcattccaccacccctactattgactttaatgccaacaagccaccatgt 37758931  T

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