View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_157 (Length: 264)
Name: NF1343_low_157
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_157 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 10550789 - 10551004
Alignment:
| Q |
11 |
cacagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagat |
110 |
Q |
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| T |
10550789 |
cacagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagat |
10550888 |
T |
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| Q |
111 |
caacccatatcactgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattc |
210 |
Q |
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| T |
10550889 |
caacccatatcactgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattc |
10550988 |
T |
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| Q |
211 |
actgtgatttaaagcc |
226 |
Q |
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|||||||||||||||| |
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| T |
10550989 |
actgtgatttaaagcc |
10551004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 19606044 - 19605988
Alignment:
| Q |
36 |
aaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccc |
92 |
Q |
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| T |
19606044 |
aaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatccc |
19605988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 10740881 - 10740824
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
90 |
Q |
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| T |
10740881 |
tttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10740824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 10565033 - 10565112
Alignment:
| Q |
12 |
acagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
91 |
Q |
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| T |
10565033 |
acagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgcatcc |
10565112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 10604758 - 10604837
Alignment:
| Q |
12 |
acagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
91 |
Q |
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| T |
10604758 |
acagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcc |
10604837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 10611716 - 10611797
Alignment:
| Q |
12 |
acagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccca |
93 |
Q |
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| T |
10611716 |
acagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatccca |
10611797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 10717122 - 10717065
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
90 |
Q |
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| T |
10717122 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10717065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 31467344 - 31467151
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatatcactgactcttg |
132 |
Q |
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|||||||||||||| || |||||||||| ||| |||| |||||||| |||||||||||| ||| | |||| ||| || | | | || ||| ||| | |
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| T |
31467344 |
tttaaagctcttgttttcgagtacatgaaaaacggaagcttagaaagttggttgcatccagcaaaagaaattgcaggtccagaaaaaacattgaatctag |
31467245 |
T |
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| Q |
133 |
agcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgatttaaagcc |
226 |
Q |
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||||||||||||||||||| ||| ||||| || |||||| |||||||||| | ||||| |||||||||||||||| |||||||||||||| |
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| T |
31467244 |
cacaaaggttaaatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcc |
31467151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 31581864 - 31581832
Alignment:
| Q |
227 |
ctagctgttgcattcaaatccaatggatatttt |
259 |
Q |
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| T |
31581864 |
ctagctgttgcattcaaatccaatggatatttt |
31581832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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